Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   EL236_RS07125 Genome accession   NZ_LR134502
Coordinates   1401580..1401891 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC13257     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1396580..1406891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL236_RS07105 (NCTC13257_01428) ctsE 1397449..1399008 (-) 1560 WP_052861618.1 GspE/PulE family protein Machinery gene
  EL236_RS07110 (NCTC13257_01429) ctsX 1398998..1399585 (-) 588 WP_052861616.1 hypothetical protein Machinery gene
  EL236_RS07115 (NCTC13257_01430) ctsP 1399589..1400197 (-) 609 WP_052861614.1 ATP-binding protein Machinery gene
  EL236_RS07120 (NCTC13257_01431) ctsD 1400190..1401602 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  EL236_RS07125 (NCTC13257_01432) ctsR 1401580..1401891 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  EL236_RS07130 (NCTC13257_01433) nifJ 1401915..1405475 (-) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  EL236_RS07135 (NCTC13257_01434) - 1405568..1406209 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=1123448 EL236_RS07125 WP_002862131.1 1401580..1401891(-) (ctsR) [Campylobacter jejuni strain NCTC13257]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1123448 EL236_RS07125 WP_002862131.1 1401580..1401891(-) (ctsR) [Campylobacter jejuni strain NCTC13257]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTACTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment