Detailed information NTG1123436

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: EL236_RS05555
• Genome accession: NZ_LR134502
• Coordinates: 1080443..1081393 (+)
• Length: 316 a.a.
• NCBI ID: WP_002866164.1
• Uniprot ID: Q9ALT6
• Organism: Campylobacter jejuni strain NCTC13257
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1075443..1086393

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL236_RS05530 (NCTC13257_01111)	-	1075801..1076814 (-)	1014	WP_052861414.1	hypothetical protein	-
EL236_RS05535 (NCTC13257_01112)	-	1076885..1077658 (+)	774	WP_002866160.1	glycosyltransferase family 25 protein	-
EL236_RS05540 (NCTC13257_01113)	wlaTB	1077651..1078607 (+)	957	WP_002891855.1	class E lipooligosaccharide biosynthesis protein WlaTB	-
EL236_RS05545 (NCTC13257_01114)	wlaTC	1078604..1079563 (+)	960	WP_002891853.1	class E lipooligosaccharide biosynthesis protein WlaTC	-
EL236_RS05550 (NCTC13257_01115)	waaV	1079566..1080384 (-)	819	WP_002877115.1	glycosyltransferase family 2 protein	-
EL236_RS05555 (NCTC13257_01116)	waaF	1080443..1081393 (+)	951	WP_002866164.1	lipopolysaccharide heptosyltransferase II	Regulator
EL236_RS05560 (NCTC13257_01117)	-	1081445..1082944 (+)	1500	WP_002877116.1	MBOAT family O-acyltransferase	-
EL236_RS05565 (NCTC13257_01118)	-	1083092..1084069 (+)	978	WP_002866168.1	hypothetical protein	-
EL236_RS05570 (NCTC13257_01119)	gmhA	1084073..1084633 (-)	561	WP_002877119.1	D-sedoheptulose 7-phosphate isomerase	-
EL236_RS05575 (NCTC13257_01120)	rfaE1	1084630..1086015 (-)	1386	WP_002877121.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-

Sequence

Protein

• Length: 316 a.a.
• Molecular weight: 36378.95 Da
• Isoelectric Point: 10.3102

>NTDB_id=1123436 EL236_RS05555 WP_002866164.1 1080443..1081393(+) (waaF) [Campylobacter jejuni strain NCTC13257]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP

Nucleotide

• Length: 951 bp

>NTDB_id=1123436 EL236_RS05555 WP_002866164.1 1080443..1081393(+) (waaF) [Campylobacter jejuni strain NCTC13257]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

3D structure

• AlphaFold DB: Q9ALT6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	94.249	99.051	0.934