Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | EL222_RS05920 | Genome accession | NZ_LR134500 |
| Coordinates | 1120046..1121005 (+) | Length | 319 a.a. |
| NCBI ID | WP_002852903.1 | Uniprot ID | A0A5Y6P8U5 |
| Organism | Campylobacter jejuni strain NCTC13261 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1102376..1134617 | 1120046..1121005 | within | 0 |
Gene organization within MGE regions
Location: 1102376..1134617
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL222_RS05835 (NCTC13261_01183) | pglI | 1102376..1103305 (-) | 930 | WP_002852770.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| EL222_RS05840 (NCTC13261_01184) | pglH | 1103298..1104377 (-) | 1080 | WP_010891911.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| EL222_RS05845 (NCTC13261_01185) | pglK | 1104374..1106068 (-) | 1695 | WP_002858308.1 | ABC-type lipopolysaccharide transporter PglK | - |
| EL222_RS05850 (NCTC13261_01186) | galE | 1106062..1107048 (-) | 987 | WP_002893768.1 | UDP-glucose 4-epimerase GalE | - |
| EL222_RS05855 (NCTC13261_01187) | - | 1107106..1107900 (-) | 795 | WP_002893767.1 | 3'-5' exonuclease | - |
| EL222_RS05860 (NCTC13261_01188) | waaC | 1107966..1108994 (+) | 1029 | WP_002893766.1 | lipopolysaccharide heptosyltransferase I | - |
| EL222_RS05865 (NCTC13261_01189) | htrB | 1108984..1109871 (+) | 888 | WP_002893765.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| EL222_RS05870 (NCTC13261_01190) | - | 1109868..1111415 (+) | 1548 | WP_002893763.1 | glycosyltransferase | - |
| EL222_RS05875 (NCTC13261_01191) | - | 1111419..1112603 (+) | 1185 | WP_002907417.1 | glycosyltransferase family 2 protein | - |
| EL222_RS05880 (NCTC13261_01192) | - | 1112659..1113717 (+) | 1059 | WP_002874244.1 | beta-1,4-N-acetylgalactosaminyltransferase | - |
| EL222_RS05885 (NCTC13261_01193) | - | 1113689..1114582 (-) | 894 | WP_002874243.1 | glycosyltransferase family 2 protein | - |
| EL222_RS05890 (NCTC13261_01194) | - | 1114671..1115546 (+) | 876 | WP_002874242.1 | alpha-2,3-sialyltransferase | - |
| EL222_RS05895 (NCTC13261_01195) | neuB | 1115547..1116587 (+) | 1041 | WP_002894656.1 | N-acetylneuraminate synthase | - |
| EL222_RS05900 (NCTC13261_01196) | neuC | 1116584..1117702 (+) | 1119 | WP_002894654.1 | UDP-N-acetylglucosamine 2-epimerase | - |
| EL222_RS05905 (NCTC13261_01197) | - | 1117699..1118364 (+) | 666 | WP_002894653.1 | acylneuraminate cytidylyltransferase family protein | - |
| EL222_RS05910 (NCTC13261_01198) | - | 1118352..1119182 (+) | 831 | WP_002894652.1 | CatB-related O-acetyltransferase | - |
| EL222_RS05915 (NCTC13261_01199) | waaV | 1119174..1119987 (-) | 814 | Protein_1135 | glycosyltransferase family 2 protein | - |
| EL222_RS05920 (NCTC13261_01201) | waaF | 1120046..1121005 (+) | 960 | WP_002852903.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| EL222_RS05925 (NCTC13261_01202) | gmhA | 1120986..1121546 (-) | 561 | WP_002852775.1 | D-sedoheptulose 7-phosphate isomerase | - |
| EL222_RS05930 (NCTC13261_01203) | rfaE1 | 1121543..1122928 (-) | 1386 | WP_002894650.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| EL222_RS05935 (NCTC13261_01204) | rfaD | 1122921..1123874 (-) | 954 | WP_002852832.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| EL222_RS05940 (NCTC13261_01205) | gmhB | 1123875..1124435 (-) | 561 | WP_002878815.1 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| EL222_RS05945 (NCTC13261_01206) | - | 1124517..1124819 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| EL222_RS05950 (NCTC13261_01207) | ccoS | 1124842..1125048 (-) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| EL222_RS05955 (NCTC13261_01208) | - | 1125045..1127402 (-) | 2358 | WP_075867355.1 | heavy metal translocating P-type ATPase | - |
| EL222_RS05960 (NCTC13261_01209) | rho | 1127511..1128809 (+) | 1299 | WP_002852852.1 | transcription termination factor Rho | - |
| EL222_RS05965 (NCTC13261_01210) | dnaX | 1128813..1130348 (+) | 1536 | WP_002858347.1 | DNA polymerase III subunit gamma/tau | - |
| EL222_RS05970 (NCTC13261_01211) | - | 1130428..1132328 (+) | 1901 | Protein_1146 | NAD(P)-binding protein | - |
| EL222_RS05975 (NCTC13261_01213) | copA | 1132318..1134423 (-) | 2106 | WP_002894644.1 | copper-translocating P-type ATPase CopA | - |
| EL222_RS05980 (NCTC13261_01214) | - | 1134423..1134617 (-) | 195 | WP_002882808.1 | cation transporter | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36766.44 Da Isoelectric Point: 10.4054
>NTDB_id=1123403 EL222_RS05920 WP_002852903.1 1120046..1121005(+) (waaF) [Campylobacter jejuni strain NCTC13261]
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKKLGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEARNLLKNPHL
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKKLGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEARNLLKNPHL
Nucleotide
Download Length: 960 bp
>NTDB_id=1123403 EL222_RS05920 WP_002852903.1 1120046..1121005(+) (waaF) [Campylobacter jejuni strain NCTC13261]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACACCATAAAAGAACA
TTTTAAAAATGCTCAGTTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTATAAACAAGCCCTATCTTTACGCAAAAAACTTGGTAAAATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACACCATAAAAGAACA
TTTTAAAAATGCTCAGTTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTATAAACAAGCCCTATCTTTACGCAAAAAACTTGGTAAAATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
94.984 |
100 |
0.95 |