Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   EL222_RS03365 Genome accession   NZ_LR134500
Coordinates   634490..634927 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain NCTC13261     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 629490..639927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL222_RS03345 (NCTC13261_00682) kdpD 629978..631909 (+) 1932 WP_002893651.1 sensor histidine kinase KdpD -
  EL222_RS03350 (NCTC13261_00683) uvrB 631904..633877 (-) 1974 WP_002856888.1 excinuclease ABC subunit UvrB -
  EL222_RS03355 (NCTC13261_00684) - 634031..634261 (+) 231 WP_002852327.1 hypothetical protein -
  EL222_RS03360 (NCTC13261_00685) - 634251..634493 (+) 243 WP_002854947.1 hypothetical protein -
  EL222_RS03365 (NCTC13261_00686) Cj0683 634490..634927 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  EL222_RS03370 (NCTC13261_00687) priA 634909..636762 (+) 1854 WP_002893649.1 primosomal protein N' -
  EL222_RS03375 cipA 636772..638167 (-) 1396 Protein_644 DUF2972 domain-containing protein -
  EL222_RS03380 (NCTC13261_00690) ispG 638313..639386 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=1123397 EL222_RS03365 WP_002852324.1 634490..634927(+) (Cj0683) [Campylobacter jejuni strain NCTC13261]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1123397 EL222_RS03365 WP_002852324.1 634490..634927(+) (Cj0683) [Campylobacter jejuni strain NCTC13261]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCGAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGCTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment