Detailed information    

insolico Bioinformatically predicted

Overview


Name   Cj0683   Type   Machinery gene
Locus tag   EL227_RS03275 Genome accession   NZ_LR134499
Coordinates   632346..632783 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain NCTC13255     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 627346..637783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL227_RS03255 (NCTC13255_00654) kdpD 627834..629765 (+) 1932 WP_002856839.1 sensor histidine kinase KdpD -
  EL227_RS03260 (NCTC13255_00655) uvrB 629760..631733 (-) 1974 WP_002856888.1 excinuclease ABC subunit UvrB -
  EL227_RS03265 (NCTC13255_00656) - 631887..632117 (+) 231 WP_002852327.1 hypothetical protein -
  EL227_RS03270 (NCTC13255_00657) - 632107..632349 (+) 243 WP_002854947.1 hypothetical protein -
  EL227_RS03275 (NCTC13255_00658) Cj0683 632346..632783 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  EL227_RS03280 (NCTC13255_00659) priA 632765..634618 (+) 1854 WP_079461948.1 primosomal protein N' -
  EL227_RS03285 (NCTC13255_00660) cipA 634628..636022 (-) 1395 WP_002896028.1 DUF2972 domain-containing protein -
  EL227_RS03290 (NCTC13255_00661) ispG 636168..637241 (+) 1074 WP_002857157.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence


Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=1123369 EL227_RS03275 WP_002852324.1 632346..632783(+) (Cj0683) [Campylobacter jejuni strain NCTC13255]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1123369 EL227_RS03275 WP_002852324.1 632346..632783(+) (Cj0683) [Campylobacter jejuni strain NCTC13255]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGCTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1


Multiple sequence alignment