Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   EL232_RS09605 Genome accession   NZ_LR134498
Coordinates   1803471..1803908 (-) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain NCTC13265     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1798471..1808908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL232_RS09590 (NCTC13265_01956) ispG 1799014..1800087 (-) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  EL232_RS09595 cipA 1800233..1801626 (+) 1394 Protein_1859 DUF2972 domain-containing protein -
  EL232_RS09600 (NCTC13265_01959) priA 1801636..1803489 (-) 1854 WP_002867637.1 primosomal protein N' -
  EL232_RS09605 (NCTC13265_01960) Cj0683 1803471..1803908 (-) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  EL232_RS09610 (NCTC13265_01961) - 1803905..1804147 (-) 243 WP_002854947.1 hypothetical protein -
  EL232_RS09615 (NCTC13265_01962) - 1804137..1804367 (-) 231 WP_002852327.1 hypothetical protein -
  EL232_RS09620 (NCTC13265_01963) uvrB 1804521..1806494 (+) 1974 WP_126418173.1 excinuclease ABC subunit UvrB -
  EL232_RS10160 (NCTC13265_01964) - 1806596..1807246 (-) 651 WP_224281667.1 DUF4118 domain-containing protein -
  EL232_RS10165 (NCTC13265_01965) - 1807270..1808163 (-) 894 WP_250482767.1 hypothetical protein -
  EL232_RS09630 (NCTC13265_01966) kdpC 1808294..1808902 (-) 609 WP_002935104.1 potassium-transporting ATPase subunit KdpC -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=1123361 EL232_RS09605 WP_002852324.1 1803471..1803908(-) (Cj0683) [Campylobacter jejuni strain NCTC13265]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1123361 EL232_RS09605 WP_002852324.1 1803471..1803908(-) (Cj0683) [Campylobacter jejuni strain NCTC13265]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment