Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   EL228_RS07995 Genome accession   NZ_LR134497
Coordinates   1562667..1562978 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC13268     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1557667..1567978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL228_RS07975 (NCTC13268_01663) ctsE 1558536..1560095 (-) 1560 WP_070265383.1 GspE/PulE family protein Machinery gene
  EL228_RS07980 (NCTC13268_01664) ctsX 1560085..1560672 (-) 588 WP_004306520.1 hypothetical protein Machinery gene
  EL228_RS07985 (NCTC13268_01665) ctsP 1560676..1561284 (-) 609 WP_004306521.1 ATP-binding protein Machinery gene
  EL228_RS07990 (NCTC13268_01666) ctsD 1561277..1562689 (-) 1413 WP_004306523.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  EL228_RS07995 (NCTC13268_01667) ctsR 1562667..1562978 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  EL228_RS08000 (NCTC13268_01668) nifJ 1563002..1566562 (-) 3561 WP_070265384.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  EL228_RS08005 (NCTC13268_01669) - 1566655..1567296 (-) 642 WP_004306528.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=1123331 EL228_RS07995 WP_002862131.1 1562667..1562978(-) (ctsR) [Campylobacter jejuni strain NCTC13268]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1123331 EL228_RS07995 WP_002862131.1 1562667..1562978(-) (ctsR) [Campylobacter jejuni strain NCTC13268]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment