Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EL230_RS02350 Genome accession   NZ_LR134490
Coordinates   467276..467929 (-) Length   217 a.a.
NCBI ID   WP_126513451.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC11873     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 462276..472929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL230_RS02350 sxy/tfoX 467276..467929 (-) 654 WP_126513451.1 DNA transformation protein TfoX Regulator
  EL230_RS02355 (NCTC11873_00468) recA 468302..469366 (+) 1065 WP_005654959.1 recombinase RecA Machinery gene
  EL230_RS02360 (NCTC11873_00469) recX 469446..469904 (+) 459 WP_044332964.1 recombination regulator RecX -
  EL230_RS02365 (NCTC11873_00470) crcB 469901..470287 (-) 387 WP_005658943.1 fluoride efflux transporter CrcB -
  EL230_RS02370 (NCTC11873_00471) - 470287..471105 (-) 819 WP_112130708.1 Cof-type HAD-IIB family hydrolase -
  EL230_RS02375 (NCTC11873_00472) - 471508..472512 (+) 1005 WP_005651072.1 ornithine carbamoyltransferase -
  EL230_RS10025 (NCTC11873_00473) speFL 472718..472912 (+) 195 WP_100059562.1 leader peptide SpeFL -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25002.41 Da        Isoelectric Point: 10.1071

>NTDB_id=1123184 EL230_RS02350 WP_126513451.1 467276..467929(-) (sxy/tfoX) [Haemophilus influenzae strain NCTC11873]
MNIKDEHIESVCSLLDRLVGSVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQVLRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1123184 EL230_RS02350 WP_126513451.1 467276..467929(-) (sxy/tfoX) [Haemophilus influenzae strain NCTC11873]
ATGAATATAAAGGATGAGCATATAGAGAGCGTTTGCTCTTTGTTAGATCGGTTAGTAGGAAGTGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTAAATAAGCGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGGTTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(15-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

97.696

100

0.977

Multiple sequence alignment