Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   EL230_RS02070 Genome accession   NZ_LR134490
Coordinates   412078..412374 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain NCTC11873     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 407078..417374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL230_RS02060 (NCTC11873_00411) - 408752..411757 (+) 3006 WP_126513438.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  EL230_RS02065 - 411864..412085 (+) 222 WP_005650834.1 type II toxin-antitoxin system RelE/ParE family toxin -
  EL230_RS02070 (NCTC11873_00412) HI0659 412078..412374 (+) 297 WP_005650837.1 helix-turn-helix domain-containing protein Machinery gene
  EL230_RS02075 (NCTC11873_00413) - 412558..414474 (+) 1917 WP_126513439.1 ABC transporter ATP-binding protein -
  EL230_RS02080 (NCTC11873_00414) - 414484..415032 (+) 549 WP_005667615.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  EL230_RS02085 (NCTC11873_00415) - 415048..415599 (+) 552 WP_126513440.1 Sua5/YciO/YrdC/YwlC family protein -
  EL230_RS02090 (NCTC11873_00416) aroE 415603..416421 (+) 819 WP_126513441.1 shikimate dehydrogenase -
  EL230_RS02095 (NCTC11873_00417) - 416418..416981 (+) 564 WP_126513442.1 DNA-3-methyladenine glycosylase I -

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=1123183 EL230_RS02070 WP_005650837.1 412078..412374(+) (HI0659) [Haemophilus influenzae strain NCTC11873]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=1123183 EL230_RS02070 WP_005650837.1 412078..412374(+) (HI0659) [Haemophilus influenzae strain NCTC11873]
ATGAATAAAATTAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGTCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTATCGATTGTACCTCTAAGGGTAAAAAATGCATAG

Domains


Predicted by InterproScan.

(41-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1


Multiple sequence alignment