Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   EL230_RS00280 Genome accession   NZ_LR134490
Coordinates   57294..57806 (-) Length   170 a.a.
NCBI ID   WP_005648034.1    Uniprot ID   A0A2X1QPL8
Organism   Haemophilus influenzae strain NCTC11873     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52294..62806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL230_RS00265 (NCTC11873_00052) comQ 55600..55887 (-) 288 WP_005648029.1 DUF5374 domain-containing protein Machinery gene
  EL230_RS00270 (NCTC11873_00053) comP 55880..56563 (-) 684 WP_005648030.1 DUF2572 family protein Machinery gene
  EL230_RS00275 (NCTC11873_00054) comO 56578..57294 (-) 717 WP_005648032.1 type II secretion system protein J Machinery gene
  EL230_RS00280 (NCTC11873_00055) comN 57294..57806 (-) 513 WP_005648034.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EL230_RS00285 (NCTC11873_00056) suhB 58006..58809 (+) 804 WP_032824502.1 inositol-1-monophosphatase -
  EL230_RS00290 (NCTC11873_00057) nrfE 58918..60825 (+) 1908 WP_005666026.1 heme lyase NrfEFG subunit NrfE -
  EL230_RS00295 (NCTC11873_00058) - 60825..61355 (+) 531 WP_005666027.1 DsbE family thiol:disulfide interchange protein -
  EL230_RS00300 (NCTC11873_00059) nrfF 61352..62509 (+) 1158 WP_005666028.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19850.04 Da        Isoelectric Point: 8.4863

>NTDB_id=1123178 EL230_RS00280 WP_005648034.1 57294..57806(-) (comN) [Haemophilus influenzae strain NCTC11873]
MQKGMTLVELLIGLAIISIALNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPEEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1123178 EL230_RS00280 WP_005648034.1 57294..57806(-) (comN) [Haemophilus influenzae strain NCTC11873]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGCGCTGAATTTTGCAGTACCATT
ATGGAAAACCGATTCGCCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAAGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACAGCAATGGTGCTTAACAGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGGAAGAGGTTTATGCTCATTTTTACTACCCTTA
TTTTCCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCTGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACTAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X1QPL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

98.824

100

0.988

Multiple sequence alignment