Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   EL230_RS00270 Genome accession   NZ_LR134490
Coordinates   55880..56563 (-) Length   227 a.a.
NCBI ID   WP_005648030.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC11873     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 50880..61563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL230_RS00255 (NCTC11873_00050) nrdR 51670..52119 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  EL230_RS00260 (NCTC11873_00051) recC 52174..55554 (-) 3381 WP_005666025.1 exodeoxyribonuclease V subunit gamma -
  EL230_RS00265 (NCTC11873_00052) comQ 55600..55887 (-) 288 WP_005648029.1 DUF5374 domain-containing protein Machinery gene
  EL230_RS00270 (NCTC11873_00053) comP 55880..56563 (-) 684 WP_005648030.1 DUF2572 family protein Machinery gene
  EL230_RS00275 (NCTC11873_00054) comO 56578..57294 (-) 717 WP_005648032.1 type II secretion system protein J Machinery gene
  EL230_RS00280 (NCTC11873_00055) comN 57294..57806 (-) 513 WP_005648034.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EL230_RS00285 (NCTC11873_00056) suhB 58006..58809 (+) 804 WP_032824502.1 inositol-1-monophosphatase -
  EL230_RS00290 (NCTC11873_00057) nrfE 58918..60825 (+) 1908 WP_005666026.1 heme lyase NrfEFG subunit NrfE -
  EL230_RS00295 (NCTC11873_00058) - 60825..61355 (+) 531 WP_005666027.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25406.29 Da        Isoelectric Point: 9.5163

>NTDB_id=1123176 EL230_RS00270 WP_005648030.1 55880..56563(-) (comP) [Haemophilus influenzae strain NCTC11873]
MTIQKGIITLTILIFISGLLTVILLLDDSHLSFFRAQQNQRKHYVERTLQLQKMTATKKQTACLDLPLNNNESVKQISIA
LEGSTDAIQYFLWCERMSLFKKSPKKGDNQGALKDFVSGEKLAYFRPHFSSPPRILNANKMPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGAVITSGNLTLDGVTLAYGKKTVVALVQQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=1123176 EL230_RS00270 WP_005648030.1 55880..56563(-) (comP) [Haemophilus influenzae strain NCTC11873]
ATGACAATACAAAAAGGCATTATCACGCTGACTATTCTGATTTTTATTTCAGGTTTATTAACCGTAATCTTATTGTTGGA
TGACAGCCATTTAAGTTTTTTTCGTGCGCAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAACTGCAAAAAA
TGACCGCGACGAAAAAACAAACTGCCTGCCTTGATTTACCCTTAAATAATAATGAAAGTGTGAAGCAAATCAGCATCGCC
CTTGAGGGTTCCACCGATGCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCTATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGTGCATTGAAAGATTTTGTGAGTGGCGAAAAACTTGCCTATTTTCGACCGCACTTTTCTTCCCCGCCCA
GAATTTTAAACGCGAATAAAATGCCTAAACTTTATTGGTTTTCAGATTCACAAGCAGAGGTTGAAATTAATGGCACCGTA
TCTGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGAATTAGTGGCGCAGTGATTACCAGCGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTGGTTGCTTTAGTGCAACAATATAGTCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

98.238

100

0.982

Multiple sequence alignment