Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   EL215_RS05425 Genome accession   NZ_LR134481
Coordinates   1062610..1063563 (+) Length   317 a.a.
NCBI ID   WP_269471709.1    Uniprot ID   A0A3S4WT00
Organism   Haemophilus parainfluenzae strain NCTC10665     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1057610..1068563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL215_RS05405 (NCTC10665_01072) accA 1058219..1059166 (-) 948 WP_126470712.1 acetyl-CoA carboxylase carboxyl transferase subunit alpha -
  EL215_RS05410 (NCTC10665_01073) znuB 1059254..1060039 (-) 786 WP_126470713.1 zinc ABC transporter permease subunit ZnuB -
  EL215_RS05415 (NCTC10665_01074) znuC 1060049..1060843 (-) 795 WP_126470715.1 zinc ABC transporter ATP-binding protein ZnuC -
  EL215_RS05420 (NCTC10665_01075) mepM 1061025..1062472 (+) 1448 Protein_1041 murein DD-endopeptidase MepM -
  EL215_RS05425 (NCTC10665_01076) ceuB 1062610..1063563 (+) 954 WP_269471709.1 ABC transporter permease Machinery gene
  EL215_RS05430 (NCTC10665_01077) - 1063556..1064515 (+) 960 WP_126470719.1 iron chelate uptake ABC transporter family permease subunit -
  EL215_RS05435 (NCTC10665_01078) - 1064506..1065267 (+) 762 WP_126470721.1 ABC transporter ATP-binding protein -
  EL215_RS05440 (NCTC10665_01079) - 1065282..1066190 (+) 909 WP_126470723.1 siderophore ABC transporter substrate-binding protein -
  EL215_RS05445 (NCTC10665_01080) - 1066311..1067261 (+) 951 WP_126470725.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35008.28 Da        Isoelectric Point: 10.2813

>NTDB_id=1123040 EL215_RS05425 WP_269471709.1 1062610..1063563(+) (ceuB) [Haemophilus parainfluenzae strain NCTC10665]
MIKRRYLIFLLIVLSFVSLFLGVSTVNLKGLLNFEGNQWQIFLISRVPRLISILIAGASLSICGLVMQQLSRNRFISPTT
AGTMDSARLGILMAMLFFPTASMLLKTTIAVIVSFLGTLLFMTILSRLKFKDTIFVPLVGIMFGNIISSITAFIAYKEDL
LQNLSGWLQGDFSLVMSGRYELLYFSIPTLIVAYLFAHRFSIVGMGKDFAVNLGLNYNQVLYLGLLIVAVVSSIIIVSVG
VIPFLGLIIPNIVTLYLGDNLKKVLSHTALLGAVFVLFCDILGRSVIYPYEISINAVVGVFGSGIFLFLLLKRYRNG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1123040 EL215_RS05425 WP_269471709.1 1062610..1063563(+) (ceuB) [Haemophilus parainfluenzae strain NCTC10665]
ATGATTAAGCGACGTTATCTCATTTTTCTTTTGATCGTGCTTTCCTTTGTCTCACTTTTTCTCGGGGTGAGCACTGTTAA
TCTGAAAGGGTTACTGAATTTTGAAGGTAATCAATGGCAGATCTTTTTAATTAGTCGCGTGCCTCGCTTAATCAGTATCT
TGATTGCTGGCGCATCCTTGAGTATTTGTGGCTTAGTGATGCAGCAACTCAGTCGAAACCGATTTATTTCTCCCACCACG
GCGGGCACAATGGACAGCGCACGATTAGGCATTTTAATGGCGATGCTGTTTTTCCCAACTGCTTCTATGTTGTTAAAAAC
CACTATTGCGGTCATCGTGTCTTTTCTTGGGACATTGTTATTTATGACGATTCTGTCCCGTTTGAAATTCAAGGACACGA
TTTTTGTGCCTTTAGTGGGGATTATGTTCGGCAATATCATTAGTTCAATTACCGCCTTTATTGCTTATAAAGAAGATTTA
TTACAAAACTTATCCGGATGGCTACAAGGAGACTTTTCTCTTGTGATGTCAGGCCGTTATGAATTGTTGTATTTCAGTAT
TCCTACCCTCATCGTAGCTTATTTATTTGCGCATCGTTTTTCTATTGTCGGGATGGGGAAAGATTTTGCGGTTAATCTAG
GTCTAAATTACAACCAAGTACTTTATCTCGGTCTGCTCATTGTGGCGGTCGTATCTTCAATTATTATTGTGTCTGTTGGC
GTGATCCCTTTCTTGGGGTTAATTATCCCGAATATCGTCACACTTTATTTAGGTGATAACTTGAAGAAAGTGTTATCTCA
TACCGCCTTGTTAGGCGCCGTATTTGTTTTATTCTGCGATATTTTAGGTCGAAGTGTGATTTATCCTTATGAGATTTCCA
TTAATGCCGTGGTGGGCGTATTTGGCAGTGGTATCTTCTTATTTTTATTATTAAAGCGGTATCGAAATGGCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S4WT00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.663

97.476

0.543

Multiple sequence alignment