Detailed information NTG1123005

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: EL399_RS00615
• Genome accession: NZ_LR134480
• Coordinates: 146231..147430 (+)
• Length: 399 a.a.
• NCBI ID: WP_033455490.1
• Uniprot ID: -
• Organism: Bordetella bronchiseptica strain NCTC8344
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 141231..152430

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL399_RS00590 (NCTC8344_00122)	-	143091..143477 (+)	387	WP_003808567.1	MOSC N-terminal beta barrel domain-containing protein	-
EL399_RS00595 (NCTC8344_00123)	-	143485..144702 (-)	1218	WP_033469708.1	benzoate/H(+) symporter BenE family transporter	-
EL399_RS00600 (NCTC8344_00124)	-	144699..144950 (-)	252	WP_003808570.1	YfhL family 4Fe-4S dicluster ferredoxin	-
EL399_RS00605 (NCTC8344_00125)	coaD	145005..145514 (-)	510	WP_003808574.1	pantetheine-phosphate adenylyltransferase	-
EL399_RS00610 (NCTC8344_00126)	rsmD	145535..146155 (-)	621	WP_003808577.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
EL399_RS00615 (NCTC8344_00127)	pilA	146231..147430 (+)	1200	WP_033455490.1	signal recognition particle-docking protein FtsY	Machinery gene
EL399_RS00620	-	147477..149075 (-)	1599	WP_110123969.1	CYTH and CHAD domain-containing protein	-
EL399_RS00625 (NCTC8344_00129)	phnE	149315..150136 (-)	822	WP_003808584.1	phosphonate ABC transporter, permease protein PhnE	-
EL399_RS00630 (NCTC8344_00130)	phnE	150133..151002 (-)	870	WP_172452875.1	phosphonate ABC transporter, permease protein PhnE	-
EL399_RS00635 (NCTC8344_00131)	phnC	151020..151790 (-)	771	WP_003808589.1	phosphonate ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 41665.64 Da
• Isoelectric Point: 5.5094

>NTDB_id=1123005 EL399_RS00615 WP_033455490.1 146231..147430(+) (pilA) [Bordetella bronchiseptica strain NCTC8344]
MFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPAPMPAPQPEPQPEPQPQQPPEPAPPAMASPPVAEPQPS
VAEPQPPVAAAPEAPRKASWLSRLKQGLSRTGQNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKE
RIDDPAQVKTALRQLLADHLRPLERSFDLGRAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQ
LVEWGSRNNVTVISQDGGDPAAVAFDSVNAGRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVD
GNTGQNALAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide

• Length: 1200 bp

>NTDB_id=1123005 EL399_RS00615 WP_033455490.1 146231..147430(+) (pilA) [Bordetella bronchiseptica strain NCTC8344]
ATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGTGGACGC
AGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAACCGGCCCCGATGCCGGCCCCCCAGCCCGAGCCGCAGC
CCGAGCCGCAGCCGCAACAACCGCCCGAGCCGGCGCCGCCGGCCATGGCGTCGCCGCCTGTCGCCGAGCCGCAGCCATCT
GTCGCCGAGCCGCAGCCACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTGGCTGAGCCGGCTCAAACAGGG
CCTGTCGCGCACCGGCCAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTGGAGT
CGGCGCTGATCATGGCCGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGCCGCGCTGCGCGCGCGCGTCAAGAAAGAG
CGCATCGACGATCCGGCGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCGACCATCTGCGGCCGCTGGAGCGGTCCTT
CGACCTGGGGCGGGCCCAGCCCCTGGTGGTCATGATCGCCGGCGTCAACGGCGCGGGCAAGACGACCTCGATCGGCAAGC
TGGCGCATACCTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGACACCTTCCGCGCGGCGGCGCGCGAGCAA
TTGGTCGAATGGGGCAGCCGCAACAATGTGACCGTGATCTCGCAGGATGGCGGCGATCCGGCCGCGGTGGCGTTCGACTC
GGTCAATGCCGGACGTGCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGA
TGGAAGAATTGAAGAAGATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGCGCCGCATGAAGTGCTGCTGGTGGTCGAT
GGCAACACCGGCCAGAACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCATCACCCTCACCGGCCTGGTCGTCACCAA
GCTGGACGGCACCGCCAAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCGTGCGGCCCATCCCGGTCTATT
GGATCGGCGTGGGCGAGGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (115-174)

• SRP54-type protein, GTPase domain (SRP54) (195-397)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.7	100	0.516