Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EL280_RS16525 Genome accession   NZ_LR134475
Coordinates   3372264..3372887 (-) Length   207 a.a.
NCBI ID   WP_026612357.1    Uniprot ID   A0AAW9LN46
Organism   Klebsiella aerogenes strain NCTC9735     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3367264..3377887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL280_RS16510 (NCTC9735_03234) helD 3367499..3369553 (-) 2055 WP_047041726.1 DNA helicase IV -
  EL280_RS16515 (NCTC9735_03235) - 3369677..3370123 (+) 447 WP_020079238.1 YccF domain-containing protein -
  EL280_RS16520 (NCTC9735_03236) yccS 3370141..3372276 (+) 2136 WP_020079239.1 YccS family putative transporter -
  EL280_RS16525 (NCTC9735_03237) sxy/tfoX 3372264..3372887 (-) 624 WP_026612357.1 TfoX/Sxy family DNA transformation protein Regulator
  EL280_RS16530 (NCTC9735_03238) sulA 3373337..3373846 (+) 510 WP_015367430.1 SOS-induced cell division inhibitor SulA -
  EL280_RS16535 (NCTC9735_03239) ompA 3374199..3375251 (+) 1053 WP_080473199.1 porin OmpA -
  EL280_RS16540 (NCTC9735_03240) matP 3375343..3375795 (-) 453 WP_126338169.1 macrodomain Ter protein MatP -
  EL280_RS16545 (NCTC9735_03241) - 3375981..3377738 (+) 1758 WP_047037429.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23612.33 Da        Isoelectric Point: 10.0181

>NTDB_id=1122976 EL280_RS16525 WP_026612357.1 3372264..3372887(-) (sxy/tfoX) [Klebsiella aerogenes strain NCTC9735]
MKKISKLRFLQFQECLSPLGKISSRPLFGGYSLAIENTVFAMVAEGEIYLRVCEQSASYRVEHHSPMLMMRKNGRPVALK
YYRIDEALWQDSKMLFHLSQLSLHSARSEKQHQRDSGRLKNLPNISFHMELMLIHAGITDVKMLRTLGAEKSWLKLREHN
KGISINVLESLAGAIAGIHSAALPAQRRQELREWANTQGYSVEDYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=1122976 EL280_RS16525 WP_026612357.1 3372264..3372887(-) (sxy/tfoX) [Klebsiella aerogenes strain NCTC9735]
ATGAAGAAAATTTCAAAATTACGGTTCCTCCAGTTTCAGGAGTGCCTTTCCCCCTTAGGTAAAATCAGTAGCCGGCCTTT
ATTCGGCGGGTATAGTCTGGCGATTGAAAATACCGTATTCGCCATGGTGGCTGAGGGCGAAATCTATCTTAGGGTTTGCG
AACAAAGCGCCTCTTATCGGGTTGAACATCACAGCCCGATGCTGATGATGCGCAAGAATGGCCGGCCAGTGGCCTTAAAG
TATTACCGGATAGATGAAGCACTATGGCAGGACAGTAAAATGCTGTTTCACCTATCGCAGCTGTCATTGCATTCGGCGCG
AAGCGAAAAGCAGCATCAGCGTGATTCCGGCAGACTAAAGAATTTGCCTAATATCAGCTTCCATATGGAGTTGATGTTGA
TCCATGCCGGAATAACCGATGTGAAAATGCTGCGTACACTCGGGGCGGAAAAGAGCTGGTTAAAATTGAGAGAGCATAAT
AAAGGAATATCAATCAATGTCCTTGAGTCCCTGGCGGGCGCGATTGCCGGCATTCATTCCGCCGCGCTCCCGGCGCAGCG
GCGCCAGGAGCTACGGGAGTGGGCTAATACACAAGGATACAGCGTGGAGGATTATTCCGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.777

95.169

0.493

Multiple sequence alignment