Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   EL223_RS05350 Genome accession   NZ_LR134474
Coordinates   1095453..1096409 (+) Length   318 a.a.
NCBI ID   WP_126342659.1    Uniprot ID   -
Organism   Kurthia zopfii strain NCTC404     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1090453..1101409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL223_RS05335 (NCTC404_01104) hflX 1091367..1092632 (+) 1266 WP_126342657.1 GTPase HflX -
  EL223_RS05340 (NCTC404_01105) - 1092962..1094449 (+) 1488 WP_109348808.1 peptide MFS transporter -
  EL223_RS05345 (NCTC404_01106) - 1094535..1094957 (+) 423 WP_109348809.1 hypothetical protein -
  EL223_RS05350 (NCTC404_01107) ceuB 1095453..1096409 (+) 957 WP_126342659.1 ABC transporter permease Machinery gene
  EL223_RS05355 (NCTC404_01108) - 1096396..1097349 (+) 954 WP_109348811.1 iron chelate uptake ABC transporter family permease subunit -
  EL223_RS05360 (NCTC404_01109) - 1097346..1098110 (+) 765 WP_109348812.1 ABC transporter ATP-binding protein -
  EL223_RS05365 (NCTC404_01110) - 1098125..1099108 (+) 984 WP_126342661.1 siderophore ABC transporter substrate-binding protein -
  EL223_RS05370 (NCTC404_01111) - 1099237..1099842 (+) 606 WP_109348814.1 phosphatase PAP2 family protein -
  EL223_RS05375 (NCTC404_01112) - 1099865..1101070 (-) 1206 WP_109348877.1 MFS transporter -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35201.72 Da        Isoelectric Point: 10.4241

>NTDB_id=1122942 EL223_RS05350 WP_126342659.1 1095453..1096409(+) (ceuB) [Kurthia zopfii strain NCTC404]
MKKRYLFIALILLSVLSLFVGVSRISPVDLLDFNSEKTQIFLISRVPRLIAIILAGVGMSIAGLIMQSLSRNKFVSPTTA
GTLDATKLGILVSMMIFVNATMLERMVVAFIFALAGTFLFMQILNRIKFKDAIFIPLIGMMFGNILNSITTFFAYKMDII
QNLSTWLQGDFSTILKGRYELLYISVPILIIAYFYANRFTVAGMGEDFAKNLGIKYKRIVNFGLVLVALISTSVVLTVGV
IPFVGLIIPNIVSLFKGDNLAKTLPHTAMLGAVFLLICDILGRVIIYPYEISISLMVGVIGSAIFLYLLMRGRAYAKQ

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1122942 EL223_RS05350 WP_126342659.1 1095453..1096409(+) (ceuB) [Kurthia zopfii strain NCTC404]
ATGAAGAAAAGATATCTATTTATAGCGCTTATATTGTTATCGGTTCTTTCATTATTCGTGGGAGTTAGCCGCATATCACC
AGTAGATTTACTAGACTTCAATTCTGAGAAGACGCAAATCTTCTTAATTAGTCGAGTACCTAGACTTATAGCGATTATTC
TCGCTGGGGTTGGTATGAGTATAGCGGGTTTAATTATGCAGAGCTTAAGTCGAAACAAATTCGTATCACCTACTACTGCA
GGTACGCTTGATGCGACGAAATTAGGTATTCTTGTTTCGATGATGATCTTCGTCAATGCGACAATGCTTGAAAGAATGGT
AGTAGCATTTATTTTTGCTTTAGCAGGTACATTCCTGTTCATGCAAATTTTAAATCGTATTAAATTCAAAGATGCCATTT
TCATTCCGTTAATCGGTATGATGTTTGGTAACATCTTGAACTCAATCACGACATTCTTCGCATATAAAATGGACATCATT
CAAAACTTATCTACATGGCTGCAAGGCGACTTCTCAACAATCTTAAAAGGTCGTTATGAATTATTGTACATAAGTGTTCC
AATCCTAATCATCGCGTACTTTTATGCAAATCGTTTTACGGTTGCAGGTATGGGGGAGGACTTCGCTAAAAACCTAGGGA
TTAAATACAAACGTATTGTGAACTTTGGTTTAGTGTTAGTAGCGCTTATTTCAACATCGGTTGTGCTAACTGTCGGAGTT
ATTCCTTTTGTTGGCCTGATCATACCAAATATTGTTTCTTTATTTAAAGGAGATAATTTGGCTAAGACTTTACCACATAC
AGCAATGCTGGGGGCAGTTTTCCTATTAATCTGTGACATTCTCGGCAGGGTAATTATTTATCCCTATGAAATTTCAATCA
GCTTGATGGTAGGCGTGATTGGCAGTGCCATCTTCCTTTACTTATTAATGAGGGGGAGAGCATATGCGAAGCAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.769

96.541

0.509

Multiple sequence alignment