Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   EL187_RS05980 Genome accession   NZ_LR134471
Coordinates   1145397..1146317 (-) Length   306 a.a.
NCBI ID   WP_039651425.1    Uniprot ID   -
Organism   Campylobacter insulaenigrae strain NCTC12927     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1140397..1151317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL187_RS05960 (NCTC12927_01201) - 1140790..1142175 (-) 1386 WP_039650676.1 replicative DNA helicase -
  EL187_RS05965 (NCTC12927_01202) - 1142413..1142715 (-) 303 WP_039650677.1 HU family DNA-binding protein -
  EL187_RS05970 (NCTC12927_01203) - 1142829..1143884 (-) 1056 WP_039651423.1 hypothetical protein -
  EL187_RS05975 (NCTC12927_01204) - 1143893..1145396 (-) 1504 Protein_1161 MBOAT family O-acyltransferase -
  EL187_RS05980 (NCTC12927_01206) waaF 1145397..1146317 (-) 921 WP_039651425.1 lipopolysaccharide heptosyltransferase II Regulator
  EL187_RS05985 - 1146314..1148220 (-) 1907 Protein_1163 motility associated factor glycosyltransferase family protein -
  EL187_RS05990 (NCTC12927_01209) - 1148217..1148981 (-) 765 WP_039650681.1 glucosamine-6-P synthase, glutaminase subunit PtmA -
  EL187_RS05995 (NCTC12927_01210) - 1148981..1149688 (-) 708 WP_039650683.1 flagellin modification protein, acylneuraminate cytidylyltransferase -
  EL187_RS06000 (NCTC12927_01211) - 1149681..1150568 (-) 888 WP_039650685.1 glucosamine-6-P synthase, isomerase subunit PtmF -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 35007.51 Da        Isoelectric Point: 10.2901

>NTDB_id=1122910 EL187_RS05980 WP_039651425.1 1145397..1146317(-) (waaF) [Campylobacter insulaenigrae strain NCTC12927]
MKIFINLPTWLGDAVMASAAIYAIREKFKDAEFIFYGSFASTELFKRLPNSKIIVENKKQRYMQILKLRSQLGFFNLAFS
FRSAFSSKIILNLIKTQKRFYFDKNILKEEHQVLKYLNFIEDALEFKASSQKLQLPIQAKKNKKILGINPGAHFGSAKRW
KSEYFYEVAKEFATTHSIIIFGVKSEELICQNIENLFVKNGIKVKNLCGKTSIFTLCKNISMLDILITNDSGPMHIGAVY
GTKTLAIFGPTKFKQTSPWQQNAKLVHLNLPCMPCMKKVCPLKHHACMEDLKPDMVISLVKKLIGD

Nucleotide


Download         Length: 921 bp        

>NTDB_id=1122910 EL187_RS05980 WP_039651425.1 1145397..1146317(-) (waaF) [Campylobacter insulaenigrae strain NCTC12927]
ATGAAAATTTTTATTAATCTTCCGACTTGGCTTGGTGATGCTGTAATGGCTAGTGCTGCTATTTATGCTATAAGAGAAAA
ATTTAAAGATGCTGAATTTATTTTTTATGGTTCTTTTGCTAGTACAGAACTTTTTAAACGCTTGCCAAATTCTAAGATTA
TAGTTGAAAACAAAAAGCAAAGATATATGCAAATTTTAAAACTAAGATCCCAATTAGGTTTTTTTAATCTAGCTTTTTCT
TTTCGTTCAGCATTTTCAAGTAAGATCATTTTAAATTTAATTAAAACTCAAAAAAGATTTTATTTTGATAAAAATATTTT
AAAAGAAGAACATCAAGTATTAAAGTATTTAAATTTTATAGAAGATGCTTTAGAATTTAAAGCTAGCTCTCAAAAACTTC
AATTACCTATACAAGCAAAAAAAAATAAAAAAATTTTAGGTATTAATCCTGGAGCCCATTTTGGAAGTGCCAAAAGATGG
AAAAGTGAATATTTTTATGAAGTTGCAAAAGAATTTGCAACAACACATAGTATTATTATTTTTGGTGTAAAAAGCGAAGA
GTTGATTTGTCAAAATATAGAAAATTTGTTTGTAAAAAATGGAATAAAAGTGAAAAATTTATGTGGTAAAACAAGTATTT
TCACTTTATGCAAAAATATTTCTATGCTAGATATACTAATTACAAATGATAGTGGTCCTATGCATATAGGTGCTGTTTAT
GGTACAAAGACGCTAGCTATTTTTGGCCCTACCAAATTTAAACAGACTTCTCCTTGGCAACAAAATGCGAAATTAGTTCA
TTTAAATTTACCTTGTATGCCTTGCATGAAAAAAGTTTGTCCTTTAAAACACCACGCTTGTATGGAGGATTTAAAACCTG
ATATGGTAATAAGTCTTGTGAAAAAATTAATAGGAGATTGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.025

100

0.641

Multiple sequence alignment