Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   EL216_RS09060 Genome accession   NZ_LR134440
Coordinates   1928440..1930479 (-) Length   679 a.a.
NCBI ID   WP_085391174.1    Uniprot ID   -
Organism   Neisseria animaloris strain NCTC12228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1923440..1935479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL216_RS09035 (NCTC12228_01823) dxs 1924051..1925949 (-) 1899 WP_085391178.1 1-deoxy-D-xylulose-5-phosphate synthase -
  EL216_RS09040 (NCTC12228_01824) - 1926132..1926641 (+) 510 WP_085391177.1 MliC family protein -
  EL216_RS09045 (NCTC12228_01825) - 1926964..1927266 (-) 303 WP_126300864.1 nucleotidyltransferase domain-containing protein -
  EL216_RS09050 (NCTC12228_01826) - 1927229..1927663 (-) 435 WP_126300865.1 hypothetical protein -
  EL216_RS09055 (NCTC12228_01827) - 1927660..1928322 (-) 663 WP_126300866.1 HNH endonuclease signature motif containing protein -
  EL216_RS09060 (NCTC12228_01828) recG 1928440..1930479 (-) 2040 WP_085391174.1 ATP-dependent DNA helicase RecG Machinery gene
  EL216_RS09065 (NCTC12228_01829) - 1930668..1932770 (-) 2103 WP_085391173.1 TonB-dependent siderophore receptor -
  EL216_RS09070 (NCTC12228_01830) secB 1932928..1933362 (-) 435 WP_085391186.1 protein-export chaperone SecB -
  EL216_RS09075 (NCTC12228_01831) grxC 1933428..1933694 (-) 267 WP_085391172.1 glutaredoxin 3 -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 75495.22 Da        Isoelectric Point: 7.7790

>NTDB_id=1122868 EL216_RS09060 WP_085391174.1 1928440..1930479(-) (recG) [Neisseria animaloris strain NCTC12228]
MTPEHQKLLKITDTAAKKLEKLNLHTPWDVALHLPLRYEDETHIMPIKDAPIGVPCQVEGVVTLQEVQFKPRKQLVVQIQ
DHSGSVLFLRFIHFYPSHQKQMAQGKRIRAVGEIKHGFHGDEMIHPKIRDADNSSLAESLTPVYPTVNGLNQPTLRRIVQ
TALEALPLHDTLPDELLGRLKLPHLAESLRLLHAPPPDYSIRQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRISGQAA
PLHGTGEWSGKLLNALPFSLTQAQQRVLAEIRADMRQTHPMHRLLQGDVGSGKTIVAALAALTAVEAGSQVAVMAPTEIL
AEQHYLKFKQWLEPLGLSVAWLSGSQRKKAKEQNKAALSDGLAPIAVGTHALFQEDVQFHNLGLVIVDEQHRFGVAQRLA
LKNKGQDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPNRTPIQTRLVNSQRRPEVEGFVLNTCRKGRQVYWVCPLIE
ESETLQLQTATETQAALQTALPELSIGLVHGRMKAAEKAQVMAEFAAGRLNVLVATTVIEVGVDVPNASLMVIEHSERMG
LAQLHQLRGRVGRGAAASTCVLLFAEPLSDLAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEED
LHLLEKAREIAPQLIEERPDIVEAHLNRWLASRESYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=1122868 EL216_RS09060 WP_085391174.1 1928440..1930479(-) (recG) [Neisseria animaloris strain NCTC12228]
ATGACACCCGAACACCAAAAGCTGCTCAAAATCACCGACACCGCCGCCAAAAAGCTCGAAAAGCTCAACCTGCACACCCC
GTGGGACGTTGCCCTGCACCTGCCGCTGCGCTACGAAGACGAAACCCACATCATGCCGATTAAAGACGCACCTATCGGTG
TGCCGTGCCAAGTCGAAGGCGTAGTAACCCTGCAAGAAGTGCAGTTCAAACCCCGCAAGCAGCTTGTCGTGCAGATTCAA
GACCACTCCGGCAGCGTGCTGTTTCTGCGCTTCATCCACTTCTACCCCAGCCATCAAAAACAAATGGCGCAAGGCAAACG
CATCCGCGCCGTGGGCGAAATCAAACACGGCTTTCACGGCGACGAAATGATCCACCCCAAAATCCGCGATGCCGACAACA
GCAGCCTTGCCGAAAGCCTCACCCCCGTTTACCCCACCGTAAACGGCCTCAACCAACCCACCTTGCGCCGCATCGTTCAG
ACGGCCTTAGAAGCCCTGCCCCTGCACGACACCCTGCCCGACGAACTCTTAGGCCGTCTGAAACTGCCGCACTTGGCCGA
AAGCCTTCGCCTTTTGCACGCCCCGCCGCCCGATTACAGCATCCGCCAACTTTCAGACGGCACCCTCCCCGCATGGCAGC
GGCTCAAATTCGACGAACTGCTCGCCCAACAGCTCTCCATGCGGCTCGCCCGGCAAAAACGCATCAGCGGGCAGGCCGCC
CCCCTGCACGGCACCGGCGAATGGTCGGGCAAACTGCTCAACGCCCTGCCCTTTTCCCTCACCCAAGCCCAACAGCGCGT
GCTGGCCGAAATCCGCGCCGACATGCGCCAAACCCACCCCATGCACCGCCTGCTGCAAGGCGACGTAGGCAGCGGCAAAA
CCATCGTCGCCGCCCTAGCCGCCCTCACCGCCGTCGAAGCCGGCAGCCAAGTTGCCGTGATGGCACCCACCGAAATCCTC
GCCGAACAGCACTACCTCAAATTCAAACAATGGCTCGAGCCGCTCGGCCTCAGCGTTGCATGGCTTTCCGGCAGCCAGCG
CAAAAAAGCCAAAGAACAAAACAAAGCCGCCCTTTCAGACGGCCTCGCCCCCATCGCCGTCGGCACCCACGCCCTCTTTC
AAGAAGACGTACAGTTCCACAACCTCGGCCTCGTCATCGTCGACGAACAGCACCGCTTCGGCGTCGCCCAACGCCTCGCC
CTCAAAAACAAAGGGCAAGACGTACACCAGCTCATGATGTCCGCCACACCCATCCCACGCACGCTGGCCATGAGCTTTTT
CGCCGACCTCGACGTTTCCGTGATCGACGAACTGCCGCCCAACCGCACCCCCATCCAAACCCGCCTCGTCAACAGCCAGC
GCCGCCCCGAAGTCGAAGGCTTCGTACTCAACACCTGCCGCAAAGGGCGGCAGGTTTACTGGGTCTGCCCCCTCATCGAA
GAAAGCGAAACCCTGCAACTGCAAACCGCCACCGAAACCCAAGCCGCCCTTCAAACCGCCCTGCCCGAACTCAGCATCGG
CCTCGTCCACGGCCGCATGAAAGCCGCCGAAAAAGCCCAAGTGATGGCCGAATTTGCCGCAGGCCGTCTGAACGTACTCG
TTGCCACCACCGTTATCGAAGTCGGCGTAGACGTACCCAACGCCAGCCTCATGGTTATCGAACACTCCGAACGCATGGGC
TTGGCACAACTGCACCAACTGCGCGGACGCGTAGGCCGCGGAGCCGCCGCCAGCACCTGCGTCTTACTCTTCGCCGAACC
CCTGAGCGACTTGGCCAAAGCCCGCCTCAAAGTCATCTACGAACACACCGACGGCTTCGAAATCGCCCGCCAAGACCTCA
ACATCCGCGGCCCCGGCGAATTTCTCGGCGCACGCCAAAGCGGCGTACCCATGCTCCGCTTCGCCAACCTCGAAGAAGAC
CTGCACCTTTTAGAAAAAGCCCGCGAAATCGCCCCCCAACTGATCGAAGAACGCCCCGACATCGTCGAAGCCCACCTCAA
CCGCTGGCTGGCGAGCAGGGAAAGTTATTTGGGGGTTTGA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(263-418)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(603-665)

Helicase conserved C-terminal domain (Helicase_C)

(467-574)

RecG wedge domain (RecG_wedge)

(12-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

82.622

100

0.826

Multiple sequence alignment