Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   EL216_RS08615 Genome accession   NZ_LR134440
Coordinates   1832811..1836026 (+) Length   1071 a.a.
NCBI ID   WP_085390980.1    Uniprot ID   -
Organism   Neisseria animaloris strain NCTC12228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1827811..1841026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL216_RS08600 (NCTC12228_01730) - 1828283..1829668 (-) 1386 WP_085390957.1 GntP family permease -
  EL216_RS08605 (NCTC12228_01731) trkA 1829973..1831373 (+) 1401 WP_085390958.1 Trk system potassium transporter TrkA -
  EL216_RS08610 (NCTC12228_01732) - 1831610..1832431 (+) 822 WP_085390959.1 class I SAM-dependent methyltransferase -
  EL216_RS08615 (NCTC12228_01733) recC 1832811..1836026 (+) 3216 WP_085390980.1 exodeoxyribonuclease V subunit gamma Machinery gene
  EL216_RS08620 (NCTC12228_01734) dnaE 1836343..1839777 (-) 3435 WP_085390981.1 DNA polymerase III subunit alpha -
  EL216_RS08625 (NCTC12228_01735) - 1839916..1840254 (-) 339 WP_085390960.1 PepSY domain-containing protein -

Sequence

Protein


Download         Length: 1071 a.a.        Molecular weight: 120917.30 Da        Isoelectric Point: 5.6809

>NTDB_id=1122867 EL216_RS08615 WP_085390980.1 1832811..1836026(+) (recC) [Neisseria animaloris strain NCTC12228]
MLYLYQSNRLENLAAVFTRLQQLAPLQNPLAAEQIVVQSQGMRRYLNTYLARELGVAANLHFSLPAGLTWRLMCGLIPDI
PALSPFAPEVMCWRLLDLFQSPVFQTASEYEAARSALHGYLGSGESAAYQLAGQLADIFDQYLVYRPQWINTWQAGGLVG
LGGDEIWQAQLWRYLDDGRQTAPHRVALWRRLLDALSADKLPERFFVFGIATMAPMYLQLLQALAEHCDVHIFALNPSSE
YWGNVIEAAQILQSEDDIDLSQSGHPLLASLGKQGRDFFDALAEAQITEERNYFTDMESVQTASEPTLLHRLQHDIQTLT
LPSEKTNRATLDDDSVRVVSAHSPLRELQVLKDQLLKILAEHPDWQLHDIAVLTPNIEPYSPFIEAVFGQAQDGAQALPY
SVSDVKLSRRQPLLYALEQTLALLESRFEVNRLLPLLDNNLVLDRFGLGREDLPLLHDTIAKLNIHWGLDGTMRGRNDNL
FTWQQGLERLVLGWLLPESGNPLWLDISAWHGDPNQTAVFSRFTAFVRTLADTARRWQQPAGIEEWTERVRRLLADLFAP
GSDDQHALQQLEQALARWQEEAALARFGSKLPRHTVIRHLSRFLDSESQAGFLRGGITFCSMVPMRSLPFKVICLLGLND
GNFPRNTKAAAFDLIAKYPQKGDRARRDDDRYLFLEAIISAREILYLSYVGRSIHSDEPLAPSALLNELIDTVAAMTGTR
SKDLHEQWVRQQPLQAFSHRYFSPQAFSDGLVSSRKDYAAALNAPAAEVGPFFSEPLGNAPDPAAPQMIGHHEFIAFWRN
PVRAWLQHTLGWREPYRDGAWKSAEPFEPQQPESIVAAYTAARRNREDFRQTERRLQAASLFPAGELGTLWQNQYQINAK
SLDGELVCSPKLPARAYTLVLENGTLEGSLNHLYRHGQIYFLNKTPSAPDRIARMLEHLIFCAVRPSETDCRATHLLLPG
NPQTLPEIPRQTACELLEKWLEYYRLGQSRPLPFFAKTSLAAAEEWQKTGEGGKALSGAYKEYLGNKENTGQKSYTEVAL
VFGGTDPIETPLFLNLIEDLLRPLLQHLDTE

Nucleotide


Download         Length: 3216 bp        

>NTDB_id=1122867 EL216_RS08615 WP_085390980.1 1832811..1836026(+) (recC) [Neisseria animaloris strain NCTC12228]
ATGCTTTATCTTTACCAATCCAACCGCCTTGAAAACCTTGCCGCCGTTTTCACCCGGCTGCAACAGCTCGCCCCGCTGCA
AAACCCGCTGGCGGCGGAGCAGATTGTGGTGCAAAGCCAAGGCATGCGCCGTTATCTGAACACGTATCTCGCGCGCGAAT
TAGGCGTGGCGGCCAACTTGCATTTCAGTCTGCCCGCCGGTTTGACTTGGCGGCTGATGTGCGGTCTGATTCCCGATATT
CCCGCCCTCAGCCCGTTTGCGCCCGAAGTGATGTGCTGGCGGCTGCTCGATTTGTTTCAAAGCCCCGTTTTTCAGACGGC
CTCCGAATACGAAGCGGCACGCTCGGCACTGCACGGCTATCTCGGCAGCGGCGAATCGGCGGCCTATCAGTTGGCGGGGC
AGCTTGCCGATATTTTCGACCAATATCTGGTTTACCGCCCGCAATGGATCAACACTTGGCAAGCCGGCGGGCTGGTAGGA
TTGGGCGGCGACGAAATCTGGCAGGCGCAGTTGTGGCGTTATCTCGACGACGGCCGCCAAACCGCTCCCCACCGCGTGGC
CTTGTGGCGGCGACTACTCGACGCATTGAGCGCCGACAAACTGCCCGAACGCTTTTTCGTGTTCGGCATCGCAACCATGG
CACCGATGTATCTGCAACTGTTGCAGGCGCTGGCCGAGCATTGCGACGTACACATTTTCGCGCTCAACCCCAGCAGCGAA
TACTGGGGTAACGTTATCGAAGCCGCGCAGATTCTGCAAAGCGAAGACGACATCGACCTTTCGCAAAGTGGCCATCCGCT
GCTAGCCTCGCTGGGCAAACAAGGGCGCGATTTTTTCGATGCGCTTGCCGAAGCGCAGATTACCGAAGAGCGCAACTATT
TCACCGACATGGAAAGCGTTCAGACGGCCTCCGAACCTACTTTGCTGCACCGTTTGCAGCATGACATCCAAACCCTGACC
CTGCCGTCTGAAAAAACAAACAGAGCTACGTTGGACGACGACTCCGTCCGCGTGGTTTCCGCCCACAGCCCCCTGCGCGA
ATTGCAGGTGTTGAAAGACCAACTGCTGAAGATTCTTGCCGAACACCCTGATTGGCAGCTGCACGACATCGCCGTGCTTA
CTCCGAACATCGAACCTTACAGTCCCTTTATCGAAGCCGTGTTCGGGCAGGCGCAGGACGGCGCACAGGCATTGCCGTAT
TCCGTCTCCGACGTGAAACTCAGCCGCCGCCAGCCCTTACTCTATGCGCTCGAACAAACCCTCGCGCTGCTCGAAAGCCG
TTTTGAAGTAAATCGCCTGCTGCCGCTGTTAGACAACAACCTCGTGCTCGACCGCTTCGGCCTCGGCCGCGAAGATTTGC
CGCTGCTGCACGATACCATCGCCAAACTCAACATCCATTGGGGCTTGGACGGCACCATGCGCGGCCGCAACGACAACCTC
TTTACTTGGCAGCAAGGTTTGGAACGGCTTGTGCTCGGTTGGCTGCTGCCCGAAAGCGGCAATCCCTTGTGGCTCGACAT
CAGCGCATGGCACGGCGACCCCAACCAAACCGCCGTGTTCAGCCGCTTCACCGCTTTCGTGCGCACGCTGGCCGACACCG
CCCGCCGCTGGCAGCAGCCCGCAGGCATAGAAGAATGGACGGAACGCGTGCGCCGGCTGCTCGCCGATCTTTTCGCCCCG
GGCAGCGACGACCAACACGCTCTGCAACAGCTCGAACAGGCACTTGCCCGCTGGCAGGAAGAAGCCGCACTCGCCCGTTT
CGGCAGCAAACTGCCCCGACACACCGTCATCCGCCATCTTAGCCGCTTTCTCGACAGCGAAAGCCAAGCCGGATTTTTGC
GCGGCGGCATCACCTTTTGCAGCATGGTGCCCATGCGCAGCCTGCCGTTCAAAGTGATCTGCCTGCTCGGGCTGAATGAC
GGCAATTTCCCGCGCAACACCAAAGCCGCCGCCTTCGACCTGATTGCCAAGTACCCGCAAAAAGGCGACCGCGCCCGCCG
CGACGACGACCGTTATCTTTTCCTCGAAGCCATCATCAGCGCGCGCGAAATCCTCTATCTGTCTTATGTAGGGCGCAGCA
TCCACAGCGACGAACCGCTTGCCCCCTCCGCCCTGCTCAACGAACTCATTGATACCGTTGCCGCCATGACCGGCACGCGC
AGTAAAGACTTGCACGAACAATGGGTCAGGCAGCAGCCCTTGCAAGCCTTCTCACACCGTTATTTTTCCCCGCAGGCTTT
TTCAGACGGCCTCGTCAGTTCCCGCAAAGACTATGCCGCCGCCCTCAATGCCCCCGCTGCCGAAGTCGGGCCGTTTTTCA
GCGAACCGCTCGGCAACGCTCCCGACCCCGCCGCGCCGCAAATGATCGGCCACCACGAATTCATCGCTTTTTGGCGCAAC
CCCGTACGTGCGTGGCTGCAACACACCCTCGGCTGGCGCGAACCCTACCGCGACGGCGCATGGAAATCCGCCGAACCTTT
CGAGCCGCAGCAGCCGGAATCCATCGTTGCTGCCTACACCGCCGCCCGCCGCAACCGCGAAGATTTCAGGCAAACCGAAC
GCCGCCTGCAAGCTGCCAGCCTTTTCCCTGCGGGCGAACTTGGCACATTGTGGCAAAACCAATATCAAATCAATGCCAAA
TCGCTCGACGGTGAACTTGTATGCAGCCCCAAACTGCCTGCCCGCGCCTACACCCTCGTTTTGGAAAACGGCACGCTCGA
AGGCAGCCTCAATCATCTCTACCGGCACGGGCAGATTTATTTTTTAAACAAAACACCCTCCGCCCCCGACCGCATCGCCC
GCATGCTCGAGCACCTCATTTTCTGCGCCGTAAGGCCGTCTGAAACCGACTGCCGCGCCACCCATCTGCTTCTGCCCGGC
AACCCCCAAACCTTACCCGAAATCCCCCGGCAGACCGCTTGCGAACTCTTGGAAAAGTGGCTCGAATACTACCGGCTCGG
CCAATCCCGCCCGCTGCCCTTTTTCGCCAAAACCAGCCTTGCCGCCGCCGAAGAATGGCAGAAAACCGGAGAGGGTGGAA
AAGCCCTTTCCGGAGCCTATAAAGAATATCTCGGCAATAAAGAAAACACCGGCCAGAAAAGCTATACCGAAGTGGCGCTG
GTGTTCGGCGGCACCGACCCCATAGAAACGCCGCTGTTTTTGAATCTGATTGAAGACTTGCTGCGGCCTTTGTTGCAGCA
CTTGGATACCGAGTAG

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(789-1005)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

64.461

98.786

0.637

Multiple sequence alignment