Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   EL216_RS07270 Genome accession   NZ_LR134440
Coordinates   1574219..1575589 (+) Length   456 a.a.
NCBI ID   WP_085390588.1    Uniprot ID   -
Organism   Neisseria animaloris strain NCTC12228     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1569219..1580589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL216_RS07245 (NCTC12228_01464) - 1570442..1571236 (-) 795 WP_085390580.1 thiazole synthase -
  EL216_RS07250 (NCTC12228_01465) yciA 1571360..1571815 (-) 456 WP_085390581.1 acyl-CoA thioester hydrolase YciA -
  EL216_RS07255 (NCTC12228_01466) thiS 1571862..1572056 (-) 195 WP_085390583.1 sulfur carrier protein ThiS -
  EL216_RS07260 (NCTC12228_01467) - 1572127..1573452 (-) 1326 WP_085390584.1 pitrilysin family protein -
  EL216_RS07265 (NCTC12228_01468) - 1573566..1574012 (-) 447 WP_085390586.1 PH domain-containing protein -
  EL216_RS07270 (NCTC12228_01469) pilA 1574219..1575589 (+) 1371 WP_085390588.1 signal recognition particle-docking protein FtsY Machinery gene
  EL216_RS07275 (NCTC12228_01470) - 1575659..1575910 (-) 252 WP_085390590.1 BolA family protein -
  EL216_RS07280 (NCTC12228_01471) ftsE 1576115..1576768 (+) 654 WP_085390592.1 cell division ATP-binding protein FtsE -
  EL216_RS07285 (NCTC12228_01472) ftsX 1576765..1577679 (+) 915 WP_085390594.1 permease-like cell division protein FtsX -
  EL216_RS07290 (NCTC12228_01473) pncC 1577980..1578453 (+) 474 WP_085390596.1 nicotinamide-nucleotide amidase -
  EL216_RS07295 (NCTC12228_01474) - 1578664..1579560 (-) 897 WP_085390736.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48704.34 Da        Isoelectric Point: 4.4016

>NTDB_id=1122863 EL216_RS07270 WP_085390588.1 1574219..1575589(+) (pilA) [Neisseria animaloris strain NCTC12228]
MFSFFKRKKKQETAETVAEPVQKPVSETGAEIADEPSALEISTPETLEPLTETQLEAVEEHEESSVLDQLVSGVVSGSSE
LPEQYDPNAPVAKIHVSPIPEGDAAPVEEAAELNSSELADALRLPDSIATMTAPVVAAADAPTKPVTEEDEPAKLGWAAR
LKKGLTKSRDQMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDVRKRVSLRGLKDGNELRGALKDAIYDL
IKPLQKPLVIPDNGQPFVIMLAGINGAGKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLQEWGARNGVTVISQSTG
DSAAVCFDAVEAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKSMPDAPHEIIVVLDANIGQNAINQVVAFDDAL
DVTGLIVTKLDGTAKGGILAALASNRPIPVRYIGVGESIDDLRPFDARAFVDALFD

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1122863 EL216_RS07270 WP_085390588.1 1574219..1575589(+) (pilA) [Neisseria animaloris strain NCTC12228]
ATGTTCAGCTTCTTTAAACGCAAGAAAAAACAGGAAACTGCCGAAACCGTTGCCGAACCTGTGCAAAAGCCGGTATCGGA
AACGGGTGCCGAAATCGCGGACGAGCCGTCCGCCCTTGAAATCTCCACGCCTGAAACCCTCGAACCGCTGACCGAAACCC
AGCTTGAAGCGGTAGAAGAACATGAAGAAAGCAGCGTGCTCGACCAGTTGGTGTCGGGCGTGGTTTCCGGCAGCAGCGAA
TTGCCCGAACAATATGATCCGAATGCGCCGGTAGCCAAAATCCACGTTTCGCCGATACCCGAAGGCGATGCCGCACCGGT
GGAAGAGGCGGCCGAACTCAACAGCAGCGAATTGGCCGATGCTTTGAGACTGCCCGACAGCATCGCCACGATGACTGCGC
CGGTGGTTGCCGCTGCCGACGCGCCTACCAAGCCTGTGACGGAGGAAGACGAACCTGCCAAGCTCGGTTGGGCGGCGCGT
TTGAAAAAAGGCCTTACCAAATCGCGCGACCAAATGGCCAAATCGCTGGCCGGCGTATTCGGCGGCGGCCAGATCGACGA
AGACCTGTATGAAGAATTGGAAACCGTGCTGATTACCAGCGATATGGGCATGGAAGCCACCGAATATCTGATGAAAGACG
TGCGCAAACGTGTATCGTTGCGCGGTTTGAAAGACGGCAACGAGCTGCGCGGTGCCTTGAAAGATGCGATTTACGATTTA
ATCAAGCCGTTGCAGAAACCGCTGGTGATTCCCGACAACGGGCAGCCGTTTGTGATTATGCTGGCCGGCATCAACGGTGC
GGGTAAAACCACTTCTATCGGCAAACTGGCCAAATACTTCCAATCGCAAGGCAAATCGGTATTGCTGGCGGCGGGCGATA
CTTTCCGCGCCGCCGCCCGAGAGCAGTTGCAGGAATGGGGTGCGCGCAACGGCGTGACCGTGATTTCGCAAAGCACGGGC
GATTCCGCAGCCGTCTGCTTCGATGCCGTCGAAGCTGCCAAAGCGCGCGGTATCGACATCGTGTTGGCCGACACCGCAGG
CCGTCTGCCGACCCAGCTTCATTTGATGGAAGAAATCAAAAAAGTGAAGCGCGTGCTGCAAAAATCCATGCCCGACGCGC
CGCATGAAATTATTGTGGTGTTGGATGCCAATATCGGTCAAAACGCCATTAATCAGGTGGTGGCATTTGATGACGCGCTC
GATGTTACCGGCCTGATTGTTACCAAACTCGACGGTACGGCCAAAGGCGGTATTTTGGCTGCGCTGGCTTCCAACCGCCC
GATTCCGGTGCGCTATATCGGCGTGGGCGAGAGCATCGACGACTTGCGCCCGTTTGACGCGCGTGCGTTTGTGGATGCTT
TGTTTGATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(256-455)

SRP54-type protein, helical bundle domain (SRP54_N)

(171-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

69.651

100

0.7

Multiple sequence alignment