Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   EL216_RS03875 Genome accession   NZ_LR134440
Coordinates   822372..822818 (-) Length   148 a.a.
NCBI ID   WP_085389498.1    Uniprot ID   -
Organism   Neisseria animaloris strain NCTC12228     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 817372..827818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL216_RS03850 (NCTC12228_00774) - 818484..819227 (-) 744 WP_085389503.1 uroporphyrinogen-III synthase -
  EL216_RS03855 (NCTC12228_00775) - 819283..819909 (-) 627 WP_085389502.1 thermonuclease family protein -
  EL216_RS03860 (NCTC12228_00776) rpiA 820000..820665 (-) 666 WP_085389501.1 ribose-5-phosphate isomerase RpiA -
  EL216_RS03865 (NCTC12228_00777) ispF 820751..821230 (-) 480 WP_085389500.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  EL216_RS03870 (NCTC12228_00778) - 821484..822257 (-) 774 WP_085389499.1 formate/nitrite transporter family protein -
  EL216_RS03875 (NCTC12228_00779) recX 822372..822818 (-) 447 WP_085389498.1 recombination regulator RecX Regulator
  EL216_RS03880 (NCTC12228_00780) - 822872..823579 (-) 708 WP_085389497.1 phosphoglycolate phosphatase -
  EL216_RS03885 (NCTC12228_00781) uhpT 823696..825093 (-) 1398 WP_085389496.1 hexose-6-phosphate:phosphate antiporter -
  EL216_RS03890 (NCTC12228_00782) - 825364..825795 (-) 432 WP_085389495.1 biopolymer transporter ExbD -
  EL216_RS03895 (NCTC12228_00783) - 825800..826459 (-) 660 WP_085389494.1 MotA/TolQ/ExbB proton channel family protein -
  EL216_RS11400 - 826501..826632 (-) 132 WP_267894240.1 hypothetical protein -
  EL216_RS03900 (NCTC12228_00784) - 826694..827635 (-) 942 WP_085389493.1 energy transducer TonB -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17323.82 Da        Isoelectric Point: 10.2899

>NTDB_id=1122852 EL216_RS03875 WP_085389498.1 822372..822818(-) (recX) [Neisseria animaloris strain NCTC12228]
MKPQKSLRTRALDILARQEISRAEFKRKLAPYAESEEELDKLLAEFAERNWQSDERFAEAYIHSKSRMHGRLRLKQALAA
KGVAEETAREFLPNRDSELQTAVAVLRKKFKRPGPDLKETQRQMRFLAYRGFDMDIIRAALKSDWEEG

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1122852 EL216_RS03875 WP_085389498.1 822372..822818(-) (recX) [Neisseria animaloris strain NCTC12228]
ATGAAACCGCAAAAATCCCTACGTACCCGCGCCTTAGATATTCTCGCCCGCCAAGAAATCAGCCGTGCCGAATTCAAGCG
CAAGCTCGCGCCTTATGCCGAAAGCGAAGAAGAGTTGGATAAACTGCTGGCGGAGTTTGCCGAACGCAACTGGCAGTCTG
ACGAGCGTTTTGCCGAAGCCTATATTCACAGCAAAAGCAGAATGCATGGCAGGCTGCGTTTGAAACAGGCGTTGGCGGCG
AAAGGCGTGGCCGAAGAAACCGCCCGCGAATTTCTGCCCAATCGCGACAGCGAACTGCAAACCGCCGTTGCCGTGTTGCG
TAAAAAGTTCAAACGGCCCGGCCCGGATTTAAAAGAAACCCAGCGGCAGATGCGTTTTCTGGCTTACCGCGGCTTTGATA
TGGACATTATCCGGGCGGCTTTGAAAAGCGATTGGGAAGAAGGCTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(35-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

68.919

100

0.689

Multiple sequence alignment