Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   EL216_RS03470 Genome accession   NZ_LR134440
Coordinates   713914..715683 (-) Length   589 a.a.
NCBI ID   WP_085390369.1    Uniprot ID   -
Organism   Neisseria animaloris strain NCTC12228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 708914..720683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL216_RS03450 (NCTC12228_00694) - 709914..711089 (+) 1176 WP_085390373.1 SPOR domain-containing protein -
  EL216_RS03455 (NCTC12228_00695) - 711092..711589 (+) 498 WP_085390372.1 CvpA family protein -
  EL216_RS03460 (NCTC12228_00696) purF 711610..713154 (+) 1545 WP_085390371.1 amidophosphoribosyltransferase -
  EL216_RS03465 (NCTC12228_00697) - 713249..713887 (-) 639 WP_085390370.1 LysE/ArgO family amino acid transporter -
  EL216_RS03470 (NCTC12228_00698) recD 713914..715683 (-) 1770 WP_085390369.1 exodeoxyribonuclease V subunit alpha Machinery gene
  EL216_RS03475 (NCTC12228_00699) - 715763..717304 (-) 1542 WP_085390368.1 OFA family MFS transporter -
  EL216_RS03480 (NCTC12228_00700) nadE 717679..718470 (+) 792 WP_085390367.1 NAD(+) synthase -
  EL216_RS03485 (NCTC12228_00701) tadA 718570..719286 (+) 717 WP_085390366.1 tRNA adenosine(34) deaminase TadA -
  EL216_RS03490 (NCTC12228_00702) greA 719368..719844 (-) 477 WP_085390518.1 transcription elongation factor GreA -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 64278.96 Da        Isoelectric Point: 5.2992

>NTDB_id=1122848 EL216_RS03470 WP_085390369.1 713914..715683(-) (recD) [Neisseria animaloris strain NCTC12228]
MTTALPSDSDQAAAEAAVAFLERHAPADTAVAAPYIPRLFAALQDGHSFIWLDNREAAELAAASNVVGKGEGMPLVLEGK
RLFLGRMWQLERDLAAEIVRLAVAEVEAVDWLQAGRNLAEWFGEKGSEGQRDAAALALLQPFMLISGGPGTGKTTTVAKL
LGLLCGSNTQLPRIALAAPTGKAAAHMARALHKALNRFELPEKAKRHLLQLEGQTVHRLLKLRPPQMQPLFNGEQPLPLD
ILVVDEASMLDVSLLLHLLRAVPQGCRVILLGDENQLPSVGAGAVLAELAQETVLDSDTAQELAAMLPQHGFTVADHPPP
LSQNVGRLKTSHRFGENSGIGCLARAVVEGDAETAWAQFARFPDELEVCTGSSRQQAEWLCDKHADYWQAVDAGDVKKAF
EHQTDAVVLAAWRDDAAAFNEEYRRCLQRYGRAGADVPWFAGQAVMITRNDYALDLFNGDVGLVMPDDTAPDMLAAYFPS
VEGYRKIALSRLPEHETAFALTVHKSQGSEYREVWLLPPSVENRGSAEGFSRALLYTAVTRARGRFVFWGTQDGFQTACR
ESCNRRSALREMIAERFADYAENGERAGR

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=1122848 EL216_RS03470 WP_085390369.1 713914..715683(-) (recD) [Neisseria animaloris strain NCTC12228]
ATGACTACTGCTTTGCCATCCGATTCCGACCAAGCCGCCGCCGAAGCTGCCGTTGCTTTTCTCGAACGCCATGCTCCCGC
CGATACCGCCGTTGCCGCTCCTTATATTCCGCGCCTGTTTGCCGCCTTGCAGGACGGACATTCCTTTATTTGGTTGGACA
ACCGCGAAGCGGCGGAGTTGGCAGCGGCCTCAAATGTGGTCGGCAAGGGAGAGGGCATGCCGCTGGTGTTGGAAGGAAAA
CGGCTTTTTCTCGGCAGAATGTGGCAGCTCGAACGCGATTTGGCGGCGGAAATCGTGCGGTTGGCGGTAGCGGAAGTTGA
AGCGGTAGACTGGTTGCAGGCAGGGCGGAACTTGGCGGAATGGTTCGGTGAAAAAGGCAGCGAAGGCCAACGCGATGCAG
CGGCTTTGGCGTTATTACAGCCGTTTATGCTGATCAGTGGTGGCCCCGGCACGGGTAAAACCACTACGGTGGCTAAGCTG
CTCGGCCTTTTGTGCGGTAGCAATACGCAACTGCCCCGAATCGCACTGGCGGCACCCACGGGTAAAGCTGCCGCGCACAT
GGCACGGGCGTTGCATAAAGCGTTAAACCGATTTGAACTGCCCGAAAAAGCTAAGCGGCATTTGCTGCAACTCGAAGGCC
AAACCGTTCACCGCCTGCTCAAGTTAAGGCCGCCGCAGATGCAGCCGCTGTTTAATGGTGAACAACCGTTACCGCTGGAT
ATTCTGGTGGTAGATGAAGCCTCGATGTTGGATGTGTCGCTGCTATTGCATTTGCTGCGTGCCGTGCCTCAGGGGTGTCG
TGTGATTTTGCTGGGCGATGAAAACCAGTTACCTTCGGTGGGTGCGGGTGCGGTGCTGGCGGAATTGGCACAAGAAACGG
TGCTGGATTCGGATACGGCGCAAGAGCTTGCCGCCATGTTGCCGCAGCACGGATTTACCGTTGCCGATCATCCGCCGCCG
TTGTCGCAGAACGTAGGCCGTCTGAAAACCAGCCACCGTTTTGGTGAAAACAGCGGTATCGGCTGTTTGGCTCGGGCGGT
AGTGGAGGGTGATGCTGAAACCGCATGGGCGCAGTTTGCCCGTTTCCCTGACGAGTTGGAAGTATGCACGGGCAGCAGCA
GGCAGCAGGCGGAATGGCTGTGCGACAAGCACGCCGATTATTGGCAGGCTGTCGACGCGGGCGATGTGAAAAAGGCGTTT
GAACATCAAACCGACGCAGTAGTGTTGGCGGCATGGCGCGATGATGCGGCGGCCTTTAACGAGGAATACCGCCGCTGCCT
GCAACGCTACGGGCGTGCCGGTGCCGATGTGCCGTGGTTTGCGGGGCAGGCGGTGATGATTACGCGTAATGATTACGCAC
TGGACTTGTTTAATGGCGATGTCGGTTTGGTAATGCCTGATGATACCGCTCCTGACATGTTGGCAGCTTATTTTCCAAGT
GTGGAAGGCTACCGCAAAATCGCCCTCAGCCGTCTGCCTGAACACGAAACCGCATTTGCGCTTACCGTGCATAAAAGCCA
AGGTTCGGAGTATCGCGAAGTGTGGCTGTTGCCGCCTTCGGTAGAAAATCGCGGCAGTGCAGAAGGTTTTTCCAGAGCCT
TGCTTTATACCGCCGTTACCCGTGCCCGCGGGCGGTTTGTGTTTTGGGGCACTCAGGACGGTTTTCAGACGGCCTGCCGG
GAAAGCTGCAACAGGCGGAGTGCTTTGCGTGAAATGATAGCCGAACGCTTTGCAGATTATGCGGAAAACGGCGAGAGAGC
CGGACGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(127-296)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(498-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

59.646

95.925

0.572

Multiple sequence alignment