Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   EL216_RS01530 Genome accession   NZ_LR134440
Coordinates   323584..325815 (+) Length   743 a.a.
NCBI ID   WP_085389724.1    Uniprot ID   -
Organism   Neisseria animaloris strain NCTC12228     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 318584..330815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL216_RS01520 (NCTC12228_00309) - 321858..322196 (+) 339 WP_054598602.1 P-II family nitrogen regulator -
  EL216_RS01525 (NCTC12228_00310) - 322303..323379 (-) 1077 WP_085389723.1 sulfate ABC transporter substrate-binding protein -
  EL216_RS01530 (NCTC12228_00311) comA 323584..325815 (+) 2232 WP_085389724.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EL216_RS01535 (NCTC12228_00312) - 325963..326697 (-) 735 WP_107879071.1 ankyrin repeat domain-containing protein -
  EL216_RS01540 (NCTC12228_00313) - 326814..327785 (-) 972 WP_085389725.1 class 1 fructose-bisphosphatase -
  EL216_RS01545 (NCTC12228_00314) - 327852..328211 (-) 360 WP_085389726.1 hypothetical protein -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81613.68 Da        Isoelectric Point: 10.2293

>NTDB_id=1122841 EL216_RS01530 WP_085389724.1 323584..325815(+) (comA) [Neisseria animaloris strain NCTC12228]
MPRFWLPLWVSGVVVSFALPAVPSWTVLAAVWLCLFAAAWRFRAAAWLLIAFSGALYGIWRTQSALEQQWPAVQTASVPL
TIEVADLPQRDDKRVRFTARARDGAGREYRLLLSDYGLRDWPAGSRWQVKARVRPPVGEVNLRGFNREAWALADGIGGVG
SIGKERQPLPENRAGVLLRVREAVSLRWRQTDTGGRDFSDGLGLMRALSIGEQSALSAQSWQAFRPLGLNHLVSISGLHV
GMVAVLAGWLTKQLLRVLPRVPKRPRVWMLAAGLAAALFYAGLAGFSVPTQRSVLMLCALAWAWWRGSGASVWAGWWQAL
AWVLLFDPLAVLGAGFWLSFGLVGALLWVSAGRLNERGWLLAVRGQWAVSLLSVAALGSMFASLPIISPLVNALAIPWFS
WVLVPLALLASLLSFGWLQWLAAAAGEYTMRVLVWVAEYAPEYAVAASPPYLLPLAVLAVLMVLLPRGTGWKPLAWLVLA
GFVLYRPPPVEEGRLKITVWDAGQGLSVLMQTKNHHLLFDTGTEHIANAQILPALNAAGVRRLDALVLSHHDADHDGGFV
EIRRSKQPRRIWVGQPEFYQGAEFCRERQWQWDGVVFEFLRPSENSKTADDNEQSCVLRVLAGGQSLLVTGDLGKRGELA
LVEKYGEGLYSQVLVLGHHGSDTSSAGGFLNAVSPQYAVASSGYANAYKHPTTAVQNRVKAHGIELLRTDLSGALVFELG
AGEEVRAGRLKTIKPYWQRKPFE

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=1122841 EL216_RS01530 WP_085389724.1 323584..325815(+) (comA) [Neisseria animaloris strain NCTC12228]
ATGCCCCGTTTCTGGCTGCCGCTCTGGGTAAGCGGCGTTGTTGTTTCGTTTGCGCTGCCCGCCGTGCCGTCTTGGACGGT
GCTAGCGGCGGTATGGCTGTGCCTGTTTGCAGCGGCGTGGCGGTTTCGGGCGGCGGCTTGGCTGCTGATTGCTTTTTCCG
GCGCGCTATACGGCATCTGGCGCACGCAGTCTGCTTTGGAGCAACAATGGCCTGCGGTTCAGACGGCCTCTGTGCCGCTC
ACAATAGAAGTGGCGGATTTGCCGCAGCGCGACGACAAACGGGTGCGTTTTACGGCGCGGGCGCGTGATGGTGCGGGGCG
GGAATACCGTTTGCTGCTGTCGGATTACGGCCTGCGTGATTGGCCGGCCGGCAGCCGTTGGCAGGTTAAGGCACGGGTTA
GGCCGCCGGTAGGCGAGGTTAATCTGCGCGGTTTCAACCGTGAGGCGTGGGCGTTGGCCGACGGCATCGGCGGGGTGGGC
AGCATCGGCAAGGAAAGGCAGCCGTTGCCGGAAAACCGTGCCGGTGTGTTGTTGCGTGTGCGTGAAGCGGTGAGCCTGCG
CTGGCGGCAAACCGATACCGGCGGGCGGGATTTTTCAGACGGCCTCGGTTTGATGCGGGCCTTGAGCATAGGCGAGCAGT
CGGCTTTGAGCGCACAGTCTTGGCAGGCGTTCCGGCCTTTGGGTTTGAACCATCTGGTGAGTATTTCCGGCCTGCATGTG
GGTATGGTGGCGGTGCTGGCGGGGTGGCTGACGAAGCAGTTGCTGCGCGTGCTGCCGCGCGTGCCGAAACGGCCGCGGGT
GTGGATGTTGGCGGCGGGTTTGGCGGCGGCGTTGTTTTATGCGGGTTTGGCGGGCTTTTCGGTGCCGACGCAACGCAGCG
TGTTGATGCTGTGTGCGCTGGCGTGGGCTTGGTGGCGCGGCAGCGGCGCGTCGGTATGGGCGGGTTGGTGGCAGGCGTTG
GCTTGGGTGCTGCTGTTCGACCCGTTGGCGGTTTTGGGTGCGGGGTTTTGGCTCTCGTTCGGCTTGGTGGGGGCTTTGCT
GTGGGTGTCGGCAGGCCGTCTGAACGAACGCGGCTGGCTGTTGGCGGTGCGCGGGCAATGGGCGGTGTCGCTGTTGTCGG
TGGCGGCCTTGGGCAGCATGTTTGCTTCGTTGCCGATAATCAGCCCGTTGGTGAATGCCTTGGCGATCCCGTGGTTTTCG
TGGGTGCTGGTGCCGCTGGCTCTGCTGGCTTCGCTGCTGTCGTTTGGTTGGCTGCAATGGCTGGCGGCCGCGGCGGGCGA
ATACACCATGCGCGTGTTGGTGTGGGTGGCGGAATATGCGCCCGAATATGCGGTTGCGGCCTCGCCGCCTTATCTGCTGC
CGTTGGCGGTGCTGGCGGTATTGATGGTGCTGCTGCCGCGCGGCACGGGCTGGAAACCGCTGGCGTGGCTGGTGTTGGCG
GGGTTTGTGCTGTACCGCCCGCCGCCTGTTGAGGAAGGCCGTCTGAAAATAACGGTGTGGGACGCGGGGCAGGGTTTGTC
GGTATTGATGCAGACGAAAAACCATCACCTGTTGTTCGACACCGGTACGGAGCACATCGCCAACGCGCAGATTCTGCCTG
CGCTGAATGCCGCCGGTGTGCGCCGTTTGGATGCGCTGGTGCTGTCGCATCACGATGCCGACCACGACGGCGGTTTTGTT
GAAATCCGCCGCTCGAAACAGCCGCGCCGAATCTGGGTGGGGCAGCCTGAGTTTTATCAGGGTGCGGAGTTTTGCAGGGA
GCGGCAATGGCAATGGGACGGCGTGGTGTTTGAGTTTTTGAGGCCGTCTGAAAACTCGAAAACGGCCGACGACAACGAGC
AAAGTTGCGTTCTGCGCGTGCTGGCGGGCGGGCAGTCGCTGCTGGTAACGGGCGATTTGGGCAAACGCGGCGAGCTGGCG
TTGGTGGAGAAATACGGCGAAGGCTTGTACAGCCAAGTGCTGGTGTTGGGGCATCACGGCAGCGACACTTCGTCGGCGGG
CGGTTTTCTGAACGCGGTTTCACCGCAATACGCCGTGGCTTCGAGCGGTTATGCCAATGCTTACAAACACCCCACCACAG
CGGTGCAAAACCGCGTGAAAGCCCACGGTATCGAGTTGTTGCGCACCGACTTATCGGGCGCGCTGGTGTTTGAACTGGGC
GCGGGAGAAGAGGTGCGGGCAGGCCGTCTGAAAACAATTAAACCGTATTGGCAGAGAAAGCCGTTTGAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(501-658)

Competence protein (Competence)

(208-465)

Domain of unknown function (DUF4131) (DUF4131)

(23-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

64.016

99.865

0.639

Multiple sequence alignment