Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   EL216_RS01295 Genome accession   NZ_LR134440
Coordinates   268927..272544 (-) Length   1205 a.a.
NCBI ID   WP_085389681.1    Uniprot ID   -
Organism   Neisseria animaloris strain NCTC12228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 263927..277544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL216_RS01275 (NCTC12228_00259) - 264803..265795 (+) 993 WP_126300823.1 tRNA-dihydrouridine synthase -
  EL216_RS01280 (NCTC12228_00260) - 265847..266806 (-) 960 WP_085389678.1 DMT family transporter -
  EL216_RS01285 (NCTC12228_00261) - 267042..268172 (-) 1131 WP_085389679.1 M14-type cytosolic carboxypeptidase -
  EL216_RS01290 (NCTC12228_00262) - 268310..268555 (+) 246 WP_085389680.1 glutaredoxin family protein -
  EL216_RS01295 (NCTC12228_00264) recB 268927..272544 (-) 3618 WP_085389681.1 exodeoxyribonuclease V subunit beta Machinery gene
  EL216_RS01300 (NCTC12228_00265) - 272680..273579 (-) 900 WP_085389682.1 Dyp-type peroxidase -
  EL216_RS01305 (NCTC12228_00266) - 273791..274879 (+) 1089 WP_085389916.1 metallophosphoesterase -
  EL216_RS01310 (NCTC12228_00267) - 274980..276608 (-) 1629 WP_085389683.1 CTP synthase -

Sequence

Protein


Download         Length: 1205 a.a.        Molecular weight: 136011.65 Da        Isoelectric Point: 5.9300

>NTDB_id=1122839 EL216_RS01295 WP_085389681.1 268927..272544(-) (recB) [Neisseria animaloris strain NCTC12228]
MPTRHQPFNPLTIPIQGTNLIEASAGTGKTYGIAALFTRLVVLEKMPVESILVVTFTKAATAELKTRLRARLDDVLRALE
ENPNAAHDSDGLQTYCEREHKDDGFILPLLTQALSQEPQARLIVRLKAAIGQFDNAAIYTIHGFCQRLLRDYAFLCQVPF
DVELAEDNRERLLVPAEDFWRANVSDNPLLARLVFKYKQTPQTVLAKIKKFISRPYLVFRRPQADLAGATATLQQTWQKV
RENLTALTETFWRVHPNLNGNSYRKTSFENLFAELRHAAEYDLLPAFNEKLAMFAADVLESKTKKHAAPDLAAYADLQML
ANLGRDLAAVGEEEQNALTTLQLDLLEHINNALAEQKKSRHERSFDDLLLDVHHALTQSPHRRTLAETVADNWKVALIDE
FQDTDPLQYEIFSRLFIRQGNPLFLVGDPKQAIYSFRGADIYAYLQAAEDAEHHYTLATNYRSHAKLINGIGALFKQKNR
PFVLEHINYTDVAASRKAGRLKPARPAIQVRWLNRNDDDSTAKEKLRRRAAEYCADEIAQALNEAAAGRLNYQKNADSEA
RPLQSGQIAVLVRTHNEGLLISQELKKRNVQSVIRSRESVFTTPEAEAVAALLGFWLQPQQTESLRFVLGSILFQQTAAE
LYTLNNDENALLAWIASAETAAATWRQHGIYAAMQQFAARHGIETRLLKSGNERSLTNYHQILEHLAEEDEQSHTPSSLH
QWLLEQIQAAQESGGSENNILRLESDDALVKIVTMHAAKGLQYPLVYCPFVWDAADNKPAEWQILHQNRQAILLAKHQLD
NTDTELLADEELAERLRLLYVALTRAEEQLNIYAAYCNDTADNTFAYLLEGGQKATRAENKVVYKAAKNEEGMAMLKANW
RRFIDDVSENTEFVFTEDAPPQTIYHSMQFSDGLYQAASIPERAFELIRHTSFTGLSRHTRSRDSERDELQPAIDPAESS
IVRPSEKMPSENSQTDGIHAFPRGTNAGVCLHEILEHFDFAASATAQTKAVSAALARYGFDDTWLPVVNAMLEHVRQTPL
TGKYALADIAADRCLPEMAFTLYMHDFNLNRLREWFARPHLNLPSECVAAAQQLDFAAVKGFLNGFIDMVYQDSDGLVCV
IDYKSNRLGDTATDYTQTAMNEAMAEHHYYLQALIYAVAVARYFKIRGLPQPQIAVRYLFLRGLDGSGNGIWAWNLDSSD
LAEWL

Nucleotide


Download         Length: 3618 bp        

>NTDB_id=1122839 EL216_RS01295 WP_085389681.1 268927..272544(-) (recB) [Neisseria animaloris strain NCTC12228]
ATGCCAACTCGCCACCAACCCTTCAACCCGCTCACCATTCCCATACAAGGTACCAATCTGATCGAAGCCTCCGCCGGCAC
GGGTAAAACCTACGGTATTGCCGCGCTGTTCACGCGGCTGGTGGTGCTCGAAAAAATGCCGGTCGAAAGCATATTAGTAG
TTACGTTTACCAAAGCCGCCACCGCCGAATTGAAAACCCGTTTGCGCGCACGTTTGGACGACGTTCTGCGGGCATTGGAA
GAAAATCCGAATGCCGCACACGATTCAGACGGCCTGCAAACCTATTGCGAACGCGAGCATAAAGATGACGGCTTTATCCT
GCCGCTGCTTACCCAAGCCTTAAGTCAAGAACCGCAAGCACGGCTGATTGTGCGCTTGAAAGCCGCCATCGGCCAATTCG
ACAATGCCGCGATTTACACCATCCACGGCTTCTGCCAACGGCTGTTACGCGATTACGCCTTTCTCTGCCAAGTGCCGTTT
GATGTCGAACTCGCTGAAGACAACCGCGAACGCCTGCTTGTGCCCGCCGAAGACTTCTGGCGCGCAAACGTGTCCGACAA
TCCCCTGTTGGCGCGGTTGGTATTCAAATACAAACAAACCCCGCAAACCGTGTTGGCAAAGATAAAAAAATTCATCAGCC
GTCCGTATTTGGTTTTCAGACGGCCTCAAGCCGATTTGGCCGGTGCAACGGCAACTTTGCAGCAAACATGGCAAAAAGTG
CGTGAAAACCTAACCGCACTCACCGAAACATTTTGGCGGGTACATCCCAACCTGAACGGCAACAGCTACCGCAAAACCTC
TTTTGAAAACCTGTTTGCCGAGCTGCGGCACGCTGCCGAATACGATCTTTTGCCTGCATTTAACGAAAAATTGGCGATGT
TTGCCGCCGACGTGTTGGAAAGCAAAACCAAAAAACACGCCGCACCCGACCTTGCCGCCTATGCCGACCTGCAAATGCTC
GCCAATCTGGGCCGCGATCTTGCCGCCGTCGGGGAAGAAGAACAAAACGCCCTTACCACCTTACAGCTCGATTTGCTCGA
ACATATCAACAACGCCTTGGCCGAACAAAAAAAATCCCGCCACGAACGCAGCTTCGACGACTTGCTGCTGGATGTTCACC
ACGCGCTCACGCAAAGCCCGCACCGCCGCACTTTGGCCGAAACCGTGGCGGACAACTGGAAAGTGGCGCTGATAGATGAA
TTCCAAGACACCGACCCGCTGCAATACGAAATTTTCAGCCGCCTGTTTATCCGGCAAGGCAACCCGCTGTTTCTGGTGGG
CGACCCCAAACAGGCGATTTACAGCTTTCGCGGTGCCGACATTTACGCCTATCTCCAAGCCGCCGAAGATGCCGAACACC
ACTACACGCTTGCCACCAACTACCGCAGCCATGCCAAGCTGATTAATGGCATCGGTGCATTGTTCAAACAAAAAAACCGC
CCCTTCGTGCTGGAACACATCAATTACACCGATGTCGCCGCCTCGCGCAAAGCAGGCCGTCTGAAACCCGCCCGCCCCGC
GATACAGGTGCGCTGGCTTAACCGTAACGACGACGATTCCACTGCCAAAGAAAAGCTGCGCCGCCGTGCTGCCGAATATT
GTGCCGACGAAATCGCCCAAGCCCTCAACGAAGCGGCGGCAGGCCGTCTGAATTATCAGAAAAACGCCGATTCCGAGGCA
CGCCCGTTGCAATCGGGGCAGATCGCCGTACTGGTACGCACCCATAACGAAGGGCTGCTGATTTCTCAAGAATTGAAAAA
ACGTAACGTGCAAAGCGTTATCCGCAGCCGCGAATCGGTATTCACCACCCCGGAAGCCGAAGCCGTAGCCGCCTTGCTCG
GTTTCTGGCTGCAACCGCAGCAAACCGAATCGTTGCGTTTCGTGCTCGGCAGTATTTTGTTTCAACAAACCGCGGCGGAA
CTCTACACCCTCAATAACGACGAAAACGCCTTGCTAGCATGGATTGCATCCGCCGAAACCGCCGCAGCCACATGGCGGCA
ACACGGCATTTACGCCGCCATGCAGCAGTTTGCCGCACGGCACGGTATAGAAACACGATTGCTTAAATCAGGCAACGAAC
GCAGCCTAACCAATTACCACCAGATTCTCGAACACCTGGCCGAAGAAGACGAACAAAGCCATACACCTTCGTCGCTGCAC
CAGTGGCTGTTGGAACAGATTCAGGCCGCACAAGAAAGCGGCGGCAGCGAAAACAACATCTTGCGGTTGGAAAGCGATGA
TGCTTTGGTCAAAATCGTTACCATGCACGCCGCCAAAGGTTTGCAGTATCCGCTGGTGTATTGCCCGTTCGTGTGGGATG
CCGCCGACAACAAACCCGCCGAATGGCAGATCCTTCATCAAAACCGGCAGGCGATATTGCTTGCCAAACACCAGCTCGAC
AACACCGATACTGAGTTACTGGCCGACGAAGAACTTGCCGAACGCCTGCGCCTGCTCTATGTCGCCCTTACCCGCGCCGA
AGAGCAGCTCAATATCTACGCCGCCTACTGCAACGACACCGCCGACAATACCTTCGCTTATTTATTGGAGGGCGGCCAAA
AGGCCACCCGTGCCGAAAACAAAGTGGTATACAAAGCAGCCAAAAACGAAGAAGGCATGGCGATGCTGAAAGCCAACTGG
CGGCGTTTTATTGACGATGTCTCTGAAAATACCGAATTTGTTTTCACGGAGGATGCTCCTCCCCAAACCATATATCACAG
CATGCAGTTTTCAGACGGCCTCTACCAAGCGGCAAGCATTCCCGAAAGAGCTTTCGAGCTGATACGCCATACCAGCTTTA
CCGGCTTGAGCCGCCACACCCGCAGCCGCGATTCCGAACGCGACGAGCTACAACCCGCCATCGATCCCGCCGAAAGCAGC
ATAGTCAGGCCGTCTGAAAAGATGCCGTCTGAAAACAGCCAAACAGACGGCATCCACGCCTTTCCGCGCGGCACCAATGC
CGGTGTGTGCCTGCATGAAATACTCGAACATTTCGACTTCGCCGCCTCCGCAACCGCCCAAACCAAAGCCGTATCCGCCG
CCCTTGCCCGTTACGGCTTCGACGATACTTGGCTGCCTGTCGTCAACGCCATGCTCGAGCATGTCCGCCAAACCCCGCTT
ACCGGCAAATACGCCCTTGCCGATATTGCCGCCGACCGCTGCCTGCCCGAAATGGCTTTCACGCTCTACATGCATGATTT
CAACCTGAACCGCCTGCGCGAATGGTTTGCCCGCCCGCATCTCAACTTGCCATCCGAATGCGTTGCCGCCGCGCAACAAC
TCGACTTTGCCGCTGTGAAAGGTTTTCTCAACGGCTTTATCGACATGGTATATCAGGATTCGGACGGCCTCGTTTGCGTT
ATCGACTATAAATCCAACCGCTTGGGCGATACCGCCACCGACTACACCCAAACGGCCATGAACGAAGCAATGGCCGAACA
CCACTACTACCTGCAAGCCCTGATTTACGCCGTCGCCGTCGCCCGCTATTTCAAGATACGCGGCCTTCCGCAGCCCCAAA
TCGCCGTGCGTTACCTGTTCCTGCGCGGCTTGGACGGCAGCGGCAACGGCATCTGGGCATGGAATTTAGACAGCTCGGAT
CTGGCGGAATGGTTATAA

Domains

Predicted by InterproScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(10-451)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1063-1181)

UvrD-like helicase C-terminal domain (UvrD_C)

(455-833)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

60.365

100

0.604

Multiple sequence alignment