Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EL204_RS09885 Genome accession   NZ_LR134404
Coordinates   2070939..2072300 (-) Length   453 a.a.
NCBI ID   WP_013598084.1    Uniprot ID   F0P1Y4
Organism   Weeksella virosa strain NCTC11634     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2065939..2077300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL204_RS09855 (NCTC11634_02005) - 2065956..2066900 (+) 945 WP_013598090.1 DUF6427 family protein -
  EL204_RS09860 (NCTC11634_02006) - 2066835..2067662 (-) 828 WP_013598089.1 UDP-2,3-diacylglucosamine diphosphatase -
  EL204_RS09865 (NCTC11634_02007) - 2067632..2068090 (-) 459 WP_013598088.1 6-carboxytetrahydropterin synthase -
  EL204_RS09870 (NCTC11634_02008) - 2068138..2068806 (+) 669 WP_013598087.1 ComF family protein -
  EL204_RS09875 (NCTC11634_02009) - 2068844..2070529 (+) 1686 WP_169308966.1 Ig-like domain-containing domain -
  EL204_RS09880 (NCTC11634_02010) - 2070501..2070926 (-) 426 WP_013598085.1 DUF2752 domain-containing protein -
  EL204_RS09885 (NCTC11634_02011) radA 2070939..2072300 (-) 1362 WP_013598084.1 DNA repair protein RadA Machinery gene
  EL204_RS09890 (NCTC11634_02012) - 2072408..2073415 (-) 1008 WP_013598083.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  EL204_RS09895 (NCTC11634_02013) panD 2073431..2073778 (-) 348 WP_013598082.1 aspartate 1-decarboxylase -
  EL204_RS09900 (NCTC11634_02014) panC 2073841..2074686 (-) 846 WP_013598081.1 pantoate--beta-alanine ligase -
  EL204_RS09905 (NCTC11634_02015) - 2074803..2075618 (+) 816 WP_013598080.1 glycogen/starch synthase -
  EL204_RS09910 (NCTC11634_02016) - 2075642..2077258 (+) 1617 WP_013598079.1 DUF4270 domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49967.48 Da        Isoelectric Point: 6.5077

>NTDB_id=1122810 EL204_RS09885 WP_013598084.1 2070939..2072300(-) (radA) [Weeksella virosa strain NCTC11634]
MAKIKTAFLCQNCGTQSSQWMGQCKNCGEWNTIVEEVIDKGEDKKVWKNPRHKTSSPVLNIREVNPLGETRISTKNAELD
RVLGGGIVPGSVILVGGEPGVGKSTLMLQIALKLNNTKILYVSGEESVNQVKLRAERIGIESDECYVLPETNTQKIFAHA
KEIQPQLIIIDSVQTLQTAYVESSPGSISQIRETTSELIQYAKETNTPVILIGHITKEGVIAGPKILEHMVDVVLQFEGD
RNHIYRILRANKNRFGSTAEIGIYEMQGSGLREVTNPSEVLIIKKDEPLSGNAVAATLEGVRPMLIEVQALVSSAVYGTP
QRSTTGFDLKRLNMLLAVLEKRAGFRLNLKDVFLNITGGIRVDDPALDLAIVAAILSSNEDITVPDNCCFAGEIGLSGEI
RAVNRVEQRVTEAEKLGFDAIFVSKYNKLKDSDHQIRIIRVSKVEEIYQKLFQ

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1122810 EL204_RS09885 WP_013598084.1 2070939..2072300(-) (radA) [Weeksella virosa strain NCTC11634]
ATGGCAAAAATCAAAACTGCATTTTTGTGTCAGAATTGTGGTACTCAGTCTTCACAATGGATGGGACAATGCAAAAATTG
TGGCGAATGGAATACAATTGTAGAAGAAGTGATCGATAAGGGAGAGGATAAAAAAGTTTGGAAAAATCCTCGTCACAAAA
CAAGCTCTCCTGTGCTGAATATTCGCGAAGTAAACCCGCTAGGCGAAACTAGAATCAGCACCAAAAACGCCGAACTCGAT
CGTGTTTTAGGTGGTGGGATTGTACCTGGATCGGTAATCTTGGTCGGAGGAGAACCTGGCGTAGGAAAATCGACCTTGAT
GTTGCAAATCGCCCTAAAACTCAACAATACAAAAATACTTTATGTCTCTGGTGAAGAAAGTGTTAACCAAGTAAAATTAC
GTGCAGAACGCATCGGAATAGAATCGGATGAATGCTATGTTTTGCCCGAAACCAATACCCAAAAAATATTTGCACATGCC
AAAGAAATTCAACCTCAACTAATTATTATCGATTCGGTTCAAACACTTCAGACTGCCTATGTAGAGTCATCACCAGGAAG
TATTTCACAAATCAGAGAAACAACATCAGAACTGATCCAATATGCAAAAGAAACCAATACGCCTGTTATTTTGATTGGTC
ATATAACCAAAGAAGGCGTTATTGCTGGGCCAAAAATTCTCGAACATATGGTCGATGTCGTTTTACAGTTCGAGGGAGAT
CGAAACCATATTTACAGAATTTTACGAGCCAATAAAAATCGTTTTGGATCGACAGCCGAAATCGGAATTTATGAAATGCA
AGGTAGTGGTTTACGCGAAGTGACTAATCCGTCTGAAGTCTTAATCATCAAAAAAGATGAACCTCTAAGCGGGAATGCAG
TTGCAGCAACATTAGAAGGTGTGCGACCGATGTTGATCGAAGTGCAAGCTTTGGTAAGTTCGGCTGTGTATGGAACACCT
CAACGTTCGACAACGGGTTTTGATCTGAAGCGTCTGAATATGCTTTTGGCCGTTCTCGAGAAAAGAGCGGGTTTTCGGCT
GAACCTAAAAGATGTCTTTCTGAATATTACAGGTGGAATTCGGGTAGATGATCCCGCCCTCGATTTAGCGATTGTTGCGG
CAATTCTCTCGTCTAACGAGGATATTACCGTGCCCGATAATTGCTGTTTTGCAGGTGAAATCGGGTTGAGTGGAGAAATA
CGTGCCGTAAATAGAGTGGAACAACGAGTTACTGAAGCCGAAAAATTAGGGTTTGATGCAATTTTTGTTTCGAAATACAA
TAAACTAAAAGATAGCGATCATCAAATCAGAATTATCAGGGTTTCTAAAGTCGAAGAGATTTATCAAAAATTATTTCAGT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-219)

Subunit ChlI of Mg-chelatase (ChlI)

(341-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0P1Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.69

100

0.492
  radA Streptococcus pneumoniae Rx1

48.69

100

0.492
  radA Streptococcus pneumoniae R6

48.69

100

0.492
  radA Streptococcus pneumoniae TIGR4

48.69

100

0.492
  radA Streptococcus mitis SK321

48.791

100

0.49
  radA Streptococcus mitis NCTC 12261

48.571

100

0.488
  radA Bacillus subtilis subsp. subtilis str. 168

48.506

96.026

0.466

Multiple sequence alignment