Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   EL190_RS00270 Genome accession   NZ_LR134395
Coordinates   56889..57176 (-) Length   95 a.a.
NCBI ID   WP_006995601.1    Uniprot ID   -
Organism   Haemophilus aegyptius strain NCTC8134     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51889..62176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL190_RS00260 (NCTC8134_00052) nrdR 52959..53408 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  EL190_RS00265 (NCTC8134_00053) recC 53463..56843 (-) 3381 WP_006995602.1 exodeoxyribonuclease V subunit gamma -
  EL190_RS00270 (NCTC8134_00054) comQ 56889..57176 (-) 288 WP_006995601.1 DUF5374 domain-containing protein Machinery gene
  EL190_RS00275 (NCTC8134_00055) comP 57169..57852 (-) 684 WP_032826264.1 DUF2572 family protein Machinery gene
  EL190_RS00280 (NCTC8134_00056) comO 57867..58583 (-) 717 WP_032826301.1 type II secretion system protein J Machinery gene
  EL190_RS00285 (NCTC8134_00057) comN 58577..59095 (-) 519 WP_032826263.1 type II secretion system protein Machinery gene
  EL190_RS00290 (NCTC8134_00058) suhB 59295..60098 (+) 804 WP_006995597.1 inositol-1-monophosphatase -
  EL190_RS00295 (NCTC8134_00059) nrfE 60207..62114 (+) 1908 WP_006995596.1 heme lyase NrfEFG subunit NrfE -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11051.84 Da        Isoelectric Point: 9.2205

>NTDB_id=1122709 EL190_RS00270 WP_006995601.1 56889..57176(-) (comQ) [Haemophilus aegyptius strain NCTC8134]
MNKGMSFITLLFSLTLFSVLFLVFNQWTASQRKSAVKTYQDFQAIQIAENQAQRQFLGLACEQLIQQNGLTFRIQCENER
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=1122709 EL190_RS00270 WP_006995601.1 56889..57176(-) (comQ) [Haemophilus aegyptius strain NCTC8134]
ATGAATAAAGGAATGTCTTTTATTACATTGTTATTTTCTTTAACTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAAGCCAAAGAAAAAGTGCGGTGAAAACTTATCAAGATTTTCAGGCAATACAGATTGCGGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCAATGTGAAAATGAACGT
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

96.842

100

0.968

Multiple sequence alignment