Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   EL212_RS07960 Genome accession   NZ_LR134394
Coordinates   1636776..1639169 (-) Length   797 a.a.
NCBI ID   WP_003719803.1    Uniprot ID   A0AAX2DS69
Organism   Listeria ivanovii subsp. londoniensis strain NCTC12701     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1631776..1644169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL212_RS07940 (NCTC12701_01617) - 1632249..1632944 (-) 696 WP_003719799.1 ABC transporter ATP-binding protein -
  EL212_RS07945 (NCTC12701_01618) - 1632953..1634449 (-) 1497 WP_003719800.1 ABC transporter permease -
  EL212_RS07950 (NCTC12701_01619) pieR 1634616..1635302 (+) 687 WP_003719801.1 two component system response regulator PieR -
  EL212_RS07955 (NCTC12701_01620) pieS 1635299..1636738 (+) 1440 WP_052010590.1 two component system sensor histidine kinase PieS -
  EL212_RS07960 (NCTC12701_01621) recD2 1636776..1639169 (-) 2394 WP_003719803.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EL212_RS07965 (NCTC12701_01622) - 1639195..1639833 (-) 639 WP_074673998.1 tetratricopeptide repeat protein -
  EL212_RS07970 (NCTC12701_01623) - 1639876..1640616 (-) 741 WP_003719805.1 alpha/beta hydrolase -
  EL212_RS07975 (NCTC12701_01624) mnmA 1640735..1641850 (-) 1116 WP_003719806.1 tRNA 2-thiouridine(34) synthase MnmA -
  EL212_RS07980 (NCTC12701_01625) - 1641869..1643017 (-) 1149 WP_038407365.1 cysteine desulfurase family protein -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 90042.22 Da        Isoelectric Point: 4.9786

>NTDB_id=1122690 EL212_RS07960 WP_003719803.1 1636776..1639169(-) (recD2) [Listeria ivanovii subsp. londoniensis strain NCTC12701]
MAEQESLALFDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNANWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAKF
GQQFKAERFRKEMPQSRAGLINYLSGELFKGIGKVTAENIVDTIGDDAITRILSDPSLLNNVPKLPSGAAENLLASLREN
QGLEHVMVGLNEYGFGPQLSMKIFQAYKQNAIEVLENNPYKLIEDVKGIGFHRADELGRKLGLGGNHPERLRAGILFMLD
SVCMQQGHVYMEQEALLAEVTFLLEESEGIRIDHAILMEQIEKLAEEQKIIMENTRVYMPSLYYSESGFAYHVKRMLKQT
QYQEQFPQSEFLLALGELEERIGVHYGDSQREALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKDG
ATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQV
VLVGDQDQLPSVGPGQVLKDILHSKQIPTVALSDIYRQKDGSSIIEMAHNIKEGMLPADFAKNSADRSFFHCTVNQIGDV
VEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGELKYRVHDKVLQLINQPEKNVFNG
DIGEIVSIIYAKENTEKQDMIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTGV
TRSKQFLILCGEEEAFRMGVERVDENKRNTTLSERLTSEDVMLEQMTNKRILTTENIAEIDPMIGMEGITPDQFMAG

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=1122690 EL212_RS07960 WP_003719803.1 1636776..1639169(-) (recD2) [Listeria ivanovii subsp. londoniensis strain NCTC12701]
ATGGCTGAACAAGAATCTCTTGCTTTATTTGACACGCCAGAAGAGCTTTTTATGAAGGGCACGATGTTGTCCACCATTTT
TTATAATGCCGAAAACCTCTTTTCTGTTGTGCGAATTCTTGTCAAAGAAACCAATGCAAATTGGGATGAAAAAGATATTA
TTGTAACTGGTTTTTTCCCCGCTTTACATGAACAAGAAGTGTATACTTTTTATGGGAAAATGCAGGAACATGCCAAATTT
GGACAGCAATTTAAAGCAGAACGTTTTAGGAAAGAAATGCCCCAATCTAGGGCTGGTTTAATTAATTATCTGTCTGGTGA
GCTTTTTAAAGGTATTGGCAAAGTGACTGCGGAAAATATTGTTGATACAATTGGCGACGATGCAATTACGCGGATTTTAT
CTGATCCAAGTTTACTTAATAATGTTCCAAAGTTACCATCTGGTGCTGCGGAGAACCTACTTGCTTCTTTACGAGAAAAT
CAAGGCTTAGAGCATGTGATGGTCGGACTAAATGAATATGGATTTGGTCCACAACTTTCGATGAAGATTTTTCAAGCGTA
TAAACAAAATGCTATCGAAGTACTTGAAAACAATCCATACAAATTAATTGAGGATGTCAAAGGTATTGGATTTCACCGGG
CGGATGAGCTCGGTCGGAAATTAGGACTAGGAGGAAATCATCCTGAACGTCTTCGTGCGGGAATTTTATTTATGCTTGAT
TCTGTATGTATGCAACAAGGCCATGTTTATATGGAACAAGAAGCGCTACTTGCAGAAGTGACCTTTTTGTTAGAAGAAAG
TGAAGGTATTCGGATTGATCATGCTATTTTAATGGAACAAATAGAAAAGCTTGCTGAAGAACAAAAAATCATCATGGAAA
ATACACGTGTCTATATGCCATCTTTATATTATTCGGAAAGTGGCTTTGCTTATCATGTAAAACGGATGTTGAAACAAACA
CAGTATCAAGAGCAATTTCCGCAGTCTGAGTTCTTGCTGGCACTTGGAGAGTTAGAAGAGCGAATTGGTGTTCATTACGG
AGATTCGCAGCGAGAGGCATTAGAACAAGCTTTAATGTCGCCGATGCTTGTACTTACTGGTGGACCGGGAACAGGAAAGA
CTACTGTTATTAAAGGTATTGTGGAATTATATGCCGAATTAAATGGCGTAAGTCTAGACCCGCATGCGTATAAAGATGGT
GCAACGTTTCCAGTTCTGTTAGCTGCACCAACTGGACGAGCAGCAAAGCGAATGTCTGAGTCAACAGGACTTCCAGCAAT
GACCATTCACCGTTTACTCGGAATGAATGGGCAAGAGCAAATGGATGATGATGCAGAGAGGTTAATTGATGGACGGCTTT
TAATTGTAGATGAAATGTCGATGGTGGATATTTGGCTTGCTAACCAATTATTTCGTGCACTCCCTGCGCACATGCAAGTA
GTTTTAGTAGGAGACCAAGACCAATTACCATCAGTTGGACCTGGACAGGTCTTGAAAGATATACTTCACTCGAAACAAAT
TCCAACCGTTGCGCTTTCAGATATCTATAGGCAAAAAGATGGATCTTCTATTATTGAGATGGCTCACAATATTAAAGAAG
GCATGTTGCCAGCTGATTTTGCGAAAAATAGTGCTGATCGTTCTTTCTTTCACTGTACCGTGAATCAAATTGGTGATGTT
GTTGAGCAAGTTGTAAAGAATGCCAAAAATAAAGGATTCCGGGCAAAAGATATTCAAGTTTTAGCACCGATGTATCGTGG
CCCGGCAGGAATCGATATTTTAAATAAAAAGCTACAAGAAATTTTTAATCCTAATGATACTGGCAGGCGAAAAGAAGTGC
AATTTGGCGAATTAAAATATCGTGTGCATGATAAAGTTCTACAATTAATTAATCAACCAGAAAAAAATGTCTTTAACGGT
GATATTGGGGAAATAGTTTCGATTATTTATGCGAAGGAAAACACTGAAAAGCAAGATATGATTGTTGTGCAATTTGATCA
AACCGAAGTATCCTATTACCGGCAAGAATTTAACCAATTGACGCATGCTTATTGTTGTTCTATTCATAAAGCACAAGGTA
GCGAGTTTCCCATTGTGATTATGCCAATTGTTCGTAGCTATTACCGAATGCTACGACGTGACTTGCTATATACGGGTGTC
ACTCGAAGTAAGCAGTTTTTGATTCTTTGTGGTGAAGAAGAGGCGTTTCGAATGGGTGTAGAGCGTGTCGATGAAAACAA
ACGTAATACGACACTTTCAGAGCGTTTAACAAGTGAAGATGTTATGCTCGAACAAATGACCAATAAACGAATTTTAACTA
CCGAAAATATTGCCGAAATAGATCCGATGATTGGGATGGAAGGAATAACCCCCGATCAGTTTATGGCAGGCTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-665)

AAA domain (AAA_30)

(346-553)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.487

98.871

0.568

Multiple sequence alignment