Detailed information    

insolico Bioinformatically predicted

Overview

Name   lqsT   Type   Regulator
Locus tag   EL220_RS19175 Genome accession   NZ_LR134388
Coordinates   2905856..2906230 (-) Length   124 a.a.
NCBI ID   WP_232002450.1    Uniprot ID   -
Organism   Legionella sainthelensi strain NCTC11988     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2900856..2911230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL220_RS12825 (NCTC11988_02703) - 2900897..2902285 (-) 1389 WP_027271411.1 aldehyde dehydrogenase family protein -
  EL220_RS12830 (NCTC11988_02704) - 2902455..2903825 (-) 1371 WP_027271410.1 glutamine synthetase family protein -
  EL220_RS12835 (NCTC11988_02705) - 2904012..2904728 (+) 717 WP_027271409.1 iron-containing redox enzyme family protein -
  EL220_RS19170 (NCTC11988_02706) lqsT 2904972..2905775 (-) 804 WP_232002449.1 sensor histidine kinase Regulator
  EL220_RS19175 (NCTC11988_02707) lqsT 2905856..2906230 (-) 375 WP_232002450.1 hypothetical protein Regulator
  EL220_RS12845 (NCTC11988_02708) mutS 2906395..2908932 (+) 2538 WP_027271407.1 DNA mismatch repair protein MutS -
  EL220_RS12850 (NCTC11988_02709) - 2909029..2910690 (+) 1662 WP_187326696.1 autotransporter assembly complex protein TamA -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 15153.26 Da        Isoelectric Point: 8.1448

>NTDB_id=1122638 EL220_RS19175 WP_232002450.1 2905856..2906230(-) (lqsT) [Legionella sainthelensi strain NCTC11988]
MKRLKESLLIIYQYLSKQTEDASHQITLFGIVMMINYPLFGVFWKFESFQLSEEFCLRLIATFLCACLALNRFWPRFLLR
WLPVFWYLVLLFCLPYFFCYLTLINHCSTLWLMNCVSAIFFFYW

Nucleotide


Download         Length: 375 bp        

>NTDB_id=1122638 EL220_RS19175 WP_232002450.1 2905856..2906230(-) (lqsT) [Legionella sainthelensi strain NCTC11988]
ATGAAGCGGTTAAAAGAGAGTTTACTTATTATTTATCAATATCTATCGAAGCAGACAGAAGATGCAAGTCACCAAATTAC
ATTATTTGGCATTGTGATGATGATCAACTATCCGCTATTTGGTGTTTTTTGGAAATTCGAAAGTTTTCAACTGAGTGAAG
AATTCTGTTTACGGCTTATCGCTACTTTTCTTTGTGCTTGTTTGGCTTTAAATCGATTTTGGCCACGTTTCTTATTGAGG
TGGCTACCTGTTTTTTGGTATCTCGTTTTATTATTTTGTTTGCCCTACTTCTTTTGCTATTTAACACTTATCAATCATTG
CTCTACGTTGTGGTTAATGAATTGTGTTTCTGCTATTTTTTTCTTTTATTGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lqsT Legionella pneumophila subsp. pneumophila str. Philadelphia 1

79.339

97.581

0.774

Multiple sequence alignment