Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   EL220_RS05535 Genome accession   NZ_LR134388
Coordinates   1234374..1234907 (-) Length   177 a.a.
NCBI ID   WP_027271739.1    Uniprot ID   -
Organism   Legionella sainthelensi strain NCTC11988     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1229374..1239907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL220_RS05520 (NCTC11988_01154) - 1232188..1232619 (-) 432 WP_232002642.1 pilus assembly protein -
  EL220_RS05525 (NCTC11988_01155) - 1232753..1233820 (-) 1068 WP_027271737.1 PilW family protein -
  EL220_RS18660 - 1233817..1233996 (-) 180 WP_232002643.1 hypothetical protein -
  EL220_RS18665 (NCTC11988_01156) pilV 1234041..1234361 (-) 321 WP_232002644.1 type IV pilus modification protein PilV -
  EL220_RS05535 (NCTC11988_01157) fimT 1234374..1234907 (-) 534 WP_027271739.1 GspH/FimT family protein Machinery gene
  EL220_RS05540 (NCTC11988_01158) - 1235006..1235860 (-) 855 WP_232002732.1 polysaccharide deacetylase family protein -
  EL220_RS05545 (NCTC11988_01159) - 1236169..1237539 (-) 1371 WP_027271741.1 hypothetical protein -
  EL220_RS05555 (NCTC11988_01160) - 1237880..1239379 (+) 1500 WP_027271742.1 ArnT family glycosyltransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18684.54 Da        Isoelectric Point: 8.0211

>NTDB_id=1122618 EL220_RS05535 WP_027271739.1 1234374..1234907(-) (fimT) [Legionella sainthelensi strain NCTC11988]
MKLRITTKQGFTLIELLITLLVLCILLVIAVPALSTLLMNNRLTAKTDIFVNSLNYARNTALGQSINVVVCPFGVAQSTT
CGGNWSNGWIVVTQPSVGTSSLLQSQQLFSADPVLSSNVTGVVFDPHGLTTTSGNFKFCDSRGGAFARSVEVLATGFVQS
SATPGQAVWDNSALTCP

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1122618 EL220_RS05535 WP_027271739.1 1234374..1234907(-) (fimT) [Legionella sainthelensi strain NCTC11988]
TTGAAGCTCAGAATAACAACCAAGCAAGGCTTCACATTAATTGAGCTCTTAATCACATTATTAGTTCTTTGTATTTTATT
AGTTATAGCAGTGCCCGCATTGAGTACCCTACTGATGAATAATCGTTTAACTGCTAAAACAGATATATTCGTAAATTCAC
TTAATTATGCTCGCAATACCGCTTTAGGTCAGTCAATTAACGTTGTAGTATGTCCTTTTGGTGTAGCTCAATCGACAACA
TGTGGTGGAAATTGGAGCAATGGATGGATTGTGGTCACTCAACCTTCTGTAGGTACGAGTTCATTATTACAAAGCCAACA
ACTTTTTTCTGCAGACCCTGTACTTTCGAGTAATGTAACCGGCGTGGTTTTTGACCCACATGGATTGACAACGACATCAG
GTAATTTTAAGTTCTGCGACAGCAGAGGGGGAGCATTTGCTCGCTCAGTAGAAGTATTGGCAACTGGATTCGTTCAATCA
AGCGCAACCCCTGGCCAGGCTGTATGGGATAACAGCGCACTTACATGTCCTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(50-156)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Legionella pneumophila strain Lp02

61.905

94.915

0.588

Multiple sequence alignment