Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EL210_RS05165 Genome accession   NZ_LR134384
Coordinates   1275468..1276850 (-) Length   460 a.a.
NCBI ID   WP_018920773.1    Uniprot ID   A0A3S5EP83
Organism   Segatella oris strain NCTC13071     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1270468..1281850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL210_RS05150 (NCTC13071_01059) - 1271527..1273074 (-) 1548 WP_018920777.1 Gfo/Idh/MocA family protein -
  EL210_RS05155 (NCTC13071_01060) - 1273369..1274619 (-) 1251 WP_004378557.1 phosphoglycerate kinase -
  EL210_RS05160 (NCTC13071_01061) queC 1274797..1275450 (-) 654 WP_018920774.1 7-cyano-7-deazaguanine synthase QueC -
  EL210_RS05165 (NCTC13071_01062) radA 1275468..1276850 (-) 1383 WP_018920773.1 DNA repair protein RadA Machinery gene
  EL210_RS05170 (NCTC13071_01063) - 1276965..1277879 (+) 915 WP_026285979.1 ABC transporter substrate-binding protein -
  EL210_RS05175 (NCTC13071_01064) - 1277889..1280216 (+) 2328 WP_018920771.1 tetratricopeptide repeat protein -
  EL210_RS05180 (NCTC13071_01065) - 1280323..1280820 (+) 498 WP_018920770.1 hypothetical protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50326.94 Da        Isoelectric Point: 7.0809

>NTDB_id=1122574 EL210_RS05165 WP_018920773.1 1275468..1276850(-) (radA) [Segatella oris strain NCTC13071]
MAKDKIAYVCSNCGQESAKWIGKCPSCGQWNTFKEIRIANDTGSMAAKNAAHAVRSSITNKNKPLFLHEISAKDEPRIDM
HDDELNRVLGGGLVPGSIVLLGGEPGIGKSTLTLQTILHMNERRILYVSGEESAHQIKMRAERIGGNSEVMILCETSLES
IFDNIKEVKPELVVIDSIQTISTSDVESSPGSITQVRECAAALLRFAKTSGIPVILIGHINKEGTLAGPKILEHIVDTVI
QFEGDQHYMYRILRSIKNRFGSTSELGIYEMQQNGLRQVSNPSELLLSQDHEGLSGVAISSAIEGVRPFLVETQALVSSA
AYGTPQRSATGFDQRRLNMLLAVLEKRVGFKLMQKDVFINIAGGLRVTDLAMDLSVIAAVLSSNVDTAIEAGWCMAGEVG
LSGEVRPVNRIEQRIAEAEKLGFAHMIIPAHNLKGFDKRKYKIELHPVRKVEEALRTLFG

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=1122574 EL210_RS05165 WP_018920773.1 1275468..1276850(-) (radA) [Segatella oris strain NCTC13071]
ATGGCCAAAGATAAAATTGCATATGTATGTAGTAACTGTGGACAAGAGTCTGCCAAATGGATTGGGAAATGTCCAAGTTG
CGGCCAATGGAACACTTTTAAGGAGATACGTATTGCCAATGACACGGGTTCTATGGCTGCAAAAAATGCAGCACATGCCG
TCAGAAGCAGCATAACGAATAAGAACAAGCCTCTCTTCCTGCATGAGATATCGGCCAAAGATGAGCCACGAATCGACATG
CACGATGACGAATTGAACCGTGTTCTCGGTGGTGGATTAGTGCCGGGAAGCATCGTTCTATTAGGCGGTGAGCCAGGAAT
AGGCAAGAGTACGCTTACTCTTCAGACCATTCTTCACATGAACGAACGCCGCATTCTCTATGTAAGCGGTGAAGAAAGTG
CCCACCAAATCAAGATGAGAGCAGAGCGTATCGGGGGCAACAGTGAGGTAATGATACTCTGTGAAACCTCACTTGAAAGC
ATCTTTGACAATATAAAAGAGGTAAAACCCGAATTAGTTGTCATCGATTCCATACAGACCATTTCCACTTCGGACGTTGA
AAGTTCTCCCGGAAGCATTACTCAAGTGCGCGAATGTGCTGCTGCCTTGCTGCGTTTTGCAAAGACAAGTGGTATTCCCG
TCATTCTAATTGGGCACATTAATAAGGAAGGAACGCTGGCAGGGCCAAAGATATTGGAACATATTGTCGATACCGTTATC
CAATTTGAAGGTGACCAACACTACATGTATCGTATTCTTCGGTCTATCAAGAACCGTTTTGGAAGCACTTCGGAACTTGG
TATCTATGAGATGCAACAGAATGGATTGCGTCAGGTTTCCAATCCTTCAGAACTGTTGTTAAGCCAAGATCATGAAGGAC
TTTCAGGTGTAGCCATCTCTTCTGCCATAGAAGGAGTGCGTCCTTTCTTGGTTGAAACACAAGCCTTGGTGTCTTCAGCG
GCCTATGGAACTCCACAGCGTTCGGCCACAGGATTTGACCAACGGCGCCTCAACATGCTGCTTGCCGTACTTGAAAAACG
CGTAGGGTTCAAACTCATGCAAAAGGATGTTTTCATCAATATTGCAGGAGGACTACGCGTCACCGACCTTGCCATGGACC
TCAGTGTGATAGCAGCAGTGTTGTCAAGCAATGTTGATACGGCTATTGAAGCAGGCTGGTGTATGGCGGGAGAAGTAGGA
CTAAGCGGCGAAGTGCGCCCTGTCAACCGTATAGAACAGCGCATTGCAGAGGCCGAGAAGTTAGGTTTTGCCCACATGAT
TATACCAGCTCATAACCTCAAAGGTTTCGACAAACGCAAATACAAGATAGAACTCCACCCTGTAAGAAAGGTAGAAGAGG
CCTTGAGAACATTATTCGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(82-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(346-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S5EP83

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.324

100

0.507
  radA Streptococcus mitis NCTC 12261

46.104

100

0.463
  radA Streptococcus pneumoniae Rx1

46.104

100

0.463
  radA Streptococcus pneumoniae D39

46.104

100

0.463
  radA Streptococcus pneumoniae R6

46.104

100

0.463
  radA Streptococcus pneumoniae TIGR4

46.104

100

0.463
  radA Streptococcus mitis SK321

45.887

100

0.461

Multiple sequence alignment