Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   EL326_RS20285 Genome accession   NZ_LR134382
Coordinates   4293239..4294465 (+) Length   408 a.a.
NCBI ID   WP_032977937.1    Uniprot ID   -
Organism   Bordetella hinzii strain NCTC13199     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4288239..4299465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL326_RS20260 (NCTC13199_04065) - 4290097..4290480 (+) 384 WP_029578345.1 MOSC N-terminal beta barrel domain-containing protein -
  EL326_RS20265 (NCTC13199_04066) - 4290477..4291688 (-) 1212 WP_032955491.1 benzoate/H(+) symporter BenE family transporter -
  EL326_RS20270 (NCTC13199_04067) - 4291685..4291939 (-) 255 WP_029578347.1 YfhL family 4Fe-4S dicluster ferredoxin -
  EL326_RS20275 (NCTC13199_04068) coaD 4292010..4292522 (-) 513 WP_029578348.1 pantetheine-phosphate adenylyltransferase -
  EL326_RS20280 (NCTC13199_04069) rsmD 4292546..4293166 (-) 621 WP_185843352.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  EL326_RS20285 (NCTC13199_04070) pilA 4293239..4294465 (+) 1227 WP_032977937.1 signal recognition particle-docking protein FtsY Machinery gene
  EL326_RS20290 (NCTC13199_04071) - 4294476..4296059 (-) 1584 WP_032955535.1 CYTH and CHAD domain-containing protein -
  EL326_RS20295 (NCTC13199_04072) phnE 4296247..4297068 (-) 822 WP_029578352.1 phosphonate ABC transporter, permease protein PhnE -
  EL326_RS20300 (NCTC13199_04073) phnE 4297065..4297928 (-) 864 WP_029578353.1 phosphonate ABC transporter, permease protein PhnE -
  EL326_RS20305 (NCTC13199_04074) phnC 4297916..4298686 (-) 771 WP_029578354.1 phosphonate ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 42429.76 Da        Isoelectric Point: 5.0586

>NTDB_id=1122541 EL326_RS20285 WP_032977937.1 4293239..4294465(+) (pilA) [Bordetella hinzii strain NCTC13199]
MFSFFKKKTPPPAAPATPAPPPEPVVQPAEPVPPPADPSPVDTAPVEPIPAQAAPLEPAAVEPAPVAPPPVPPQAAPEPV
SEPVSEPVSEPVSEPVSEPAAAAPKKASWLSRLKQGLARTGQSLGGIFVGVKVDENLFEELESALIMADAGMEATEKLLT
ALRARVKKERIEDPAQVKAALRQLLAEHLKPLERGFDLRRSQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGD
TFRAAAREQLIEWGSRNNVTVIAQEGGDPAAVAFDAVNAGRARGAGVVMIDTAGRLPTQLHLMEELKKIRRVIGKADAAA
PHEVLLVVDGNTGQNALAQIRAFDAAIQLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPVPVYWIGVGEGLEDLQPFVAEE
FATALLAD

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1122541 EL326_RS20285 WP_032977937.1 4293239..4294465(+) (pilA) [Bordetella hinzii strain NCTC13199]
ATGTTCAGCTTCTTCAAGAAAAAGACCCCTCCGCCCGCCGCGCCGGCCACGCCCGCGCCGCCGCCGGAGCCCGTCGTCCA
GCCGGCCGAGCCCGTCCCGCCGCCCGCTGACCCGTCCCCCGTTGATACGGCCCCCGTTGAGCCGATTCCGGCTCAAGCGG
CTCCCCTTGAACCGGCGGCCGTCGAACCGGCGCCTGTCGCCCCGCCGCCCGTGCCCCCGCAGGCCGCGCCCGAGCCGGTA
TCCGAGCCGGTATCCGAGCCGGTATCCGAGCCGGTATCCGAGCCGGTATCCGAGCCGGCCGCCGCCGCGCCCAAGAAGGC
GTCCTGGCTCAGCCGGCTCAAGCAGGGGCTGGCGCGCACCGGCCAGAGCCTCGGCGGCATTTTCGTCGGCGTCAAAGTCG
ACGAAAACCTGTTCGAGGAGCTGGAGTCGGCCCTCATCATGGCCGATGCGGGCATGGAGGCCACCGAAAAACTGCTCACG
GCCCTGCGCGCCCGCGTCAAGAAAGAACGCATCGAGGATCCCGCCCAGGTCAAGGCGGCGCTGCGCCAATTGCTGGCCGA
GCACCTCAAGCCGCTGGAGCGCGGCTTCGACCTGCGGCGCAGCCAGCCCCTGGTGGTGATGATTGCCGGCGTCAACGGCG
CGGGCAAGACCACCTCCATCGGCAAACTGGCCCACACCTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCCGCGGGCGAC
ACCTTCCGCGCCGCGGCGCGCGAGCAACTGATCGAATGGGGCAGCCGCAACAACGTCACCGTCATCGCCCAGGAGGGCGG
CGACCCGGCGGCGGTGGCGTTTGACGCCGTCAACGCGGGCCGCGCGCGCGGCGCCGGCGTGGTCATGATCGACACCGCGG
GGCGCCTGCCGACACAGCTGCACCTGATGGAAGAGCTCAAGAAAATCCGCCGCGTCATCGGCAAGGCCGATGCGGCCGCG
CCCCATGAAGTGCTGTTGGTGGTCGACGGCAATACGGGCCAGAACGCGCTGGCCCAGATCCGCGCCTTTGACGCCGCCAT
CCAGCTCACCGGCCTGGTGGTGACCAAGCTGGACGGCACCGCCAAGGGCGGCACGCTGGCCGCGGTCGCGGCCGGCAGCC
AGGGCGTGCGCCCCGTGCCGGTCTATTGGATCGGCGTGGGCGAGGGGCTCGAAGACCTGCAGCCCTTCGTGGCCGAGGAG
TTCGCCACCGCGCTGTTGGCCGACTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(204-406)

SRP54-type protein, helical bundle domain (SRP54_N)

(122-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.524

100

0.51

Multiple sequence alignment