Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   EL255_RS19275 Genome accession   NZ_LR134376
Coordinates   4143118..4144557 (-) Length   479 a.a.
NCBI ID   WP_042653293.1    Uniprot ID   -
Organism   Aeromonas encheleia strain NCTC12917     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4138118..4149557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL255_RS19245 (NCTC12917_03861) dagF 4138398..4139138 (+) 741 WP_042653287.1 2-dehydro-3-deoxy-phosphogluconate aldolase -
  EL255_RS19250 (NCTC12917_03862) - 4139238..4141142 (+) 1905 WP_042653288.1 transcription antiterminator -
  EL255_RS19255 (NCTC12917_03863) npr 4141161..4141433 (-) 273 WP_042653289.1 PTS phosphocarrier protein NPr -
  EL255_RS19260 (NCTC12917_03864) rapZ 4141454..4142320 (-) 867 WP_042653290.1 RNase adapter RapZ -
  EL255_RS19265 (NCTC12917_03865) ptsN 4142361..4142807 (-) 447 WP_042653291.1 PTS IIA-like nitrogen regulatory protein PtsN -
  EL255_RS19270 (NCTC12917_03866) hpf 4142810..4143097 (-) 288 WP_042653292.1 ribosome hibernation promoting factor -
  EL255_RS19275 (NCTC12917_03867) rpoN/rpoN1 4143118..4144557 (-) 1440 WP_042653293.1 RNA polymerase factor sigma-54 Machinery gene
  EL255_RS19280 (NCTC12917_03868) lptB 4144623..4145348 (-) 726 WP_042653294.1 LPS export ABC transporter ATP-binding protein -
  EL255_RS19285 (NCTC12917_03869) lptA 4145359..4145877 (-) 519 WP_042653295.1 lipopolysaccharide transport periplasmic protein LptA -
  EL255_RS19290 (NCTC12917_03870) lptC 4145864..4146424 (-) 561 WP_042653296.1 LPS export ABC transporter periplasmic protein LptC -
  EL255_RS19295 (NCTC12917_03871) kdsC 4146421..4146975 (-) 555 WP_042653297.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  EL255_RS19300 (NCTC12917_03872) - 4146975..4147970 (-) 996 WP_042653298.1 KpsF/GutQ family sugar-phosphate isomerase -
  EL255_RS19305 (NCTC12917_03873) mlaF 4148177..4148977 (+) 801 WP_042653299.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53788.72 Da        Isoelectric Point: 4.3677

>NTDB_id=1122449 EL255_RS19275 WP_042653293.1 4143118..4144557(-) (rpoN/rpoN1) [Aeromonas encheleia strain NCTC12917]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEESETQETNPEEAVDASQLDSSDAMAQDKMP
DELPVDTTWDDVYSAGTAQSAGPIHDGEDSVYQGETTESLQDYLLWQMRLTPFSDLDAAIALAIIDAIDESGYLTVSLED
IQAAVSSDEVEVELDEVEAVLKRVQHFDPIGIAARSVQECLLIQLGQYAPDLPWLNEAREVINEHMDLLGNRDYRTLARK
TKLKESDLKEVLDLIQQLEPRPGNGIIQNESQYVIPDVSVVKKGYKWVVELNPDSAPRIRVNETYAAMARQAKTSQDSQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=1122449 EL255_RS19275 WP_042653293.1 4143118..4144557(-) (rpoN/rpoN1) [Aeromonas encheleia strain NCTC12917]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACGCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAGCGAGA
CGCAGGAGACCAACCCGGAAGAGGCGGTCGACGCCAGTCAACTCGATTCCAGCGATGCCATGGCTCAGGACAAGATGCCA
GATGAGCTGCCGGTGGATACCACCTGGGACGATGTCTATTCGGCCGGAACGGCCCAGAGCGCCGGCCCTATCCACGATGG
GGAGGACAGCGTCTACCAGGGGGAAACCACCGAGAGCCTGCAGGACTATCTGCTGTGGCAGATGCGACTGACCCCCTTCA
GCGATCTGGATGCCGCCATTGCCCTCGCCATCATCGACGCCATCGACGAATCCGGCTATTTGACCGTTTCTCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGATGAGGTAGAAGTCGAACTGGATGAAGTCGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGATCGGCATTGCCGCCCGTTCGGTACAGGAGTGTCTGCTGATCCAGCTCGGCCAGTATGCGCCCGATCTGCCCT
GGCTCAATGAGGCGAGGGAGGTGATCAATGAGCACATGGACTTGCTCGGCAACCGCGATTACCGGACCCTGGCGCGCAAG
ACCAAACTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTCATCCAGCAGCTGGAGCCAAGGCCAGGCAATGGCATCAT
CCAGAACGAGTCTCAATATGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGCTACAAGTGGGTGGTGGAACTGAATCCGG
ATTCGGCGCCGCGCATTAGGGTCAATGAGACCTACGCGGCCATGGCCAGACAGGCCAAGACCAGTCAGGACTCCCAGTTC
ATCCGCTCTCACCTGCAGGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGTCGTAACGACACCCTGCTCAAGGTCGCCAG
CTGCATCGTCGAACAGCAGCAGGGCTTCTTCGAGTACGGTGAAGAGGCCATGAAGCCCATGGTGCTCAACGACATCGCCG
AGGCGGTGGAGATGCACGAGTCGACGATCTCACGGGTGACGACCCAGAAGTACATGCACACGCCCCGTGGCATCTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCCCTGATCAA
AAAGTTGGTGACGGCAGAGAACCCTGCCAAACCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGTAAGCGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.957

100

0.486

Multiple sequence alignment