Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   EL239_RS10765 Genome accession   NZ_LR134374
Coordinates   2422654..2423337 (+) Length   227 a.a.
NCBI ID   WP_126339332.1    Uniprot ID   -
Organism   Legionella spiritensis strain NCTC12082     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2417654..2428337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL239_RS10745 (NCTC12082_02182) - 2417865..2418047 (-) 183 WP_058483989.1 dodecin domain-containing protein -
  EL239_RS10750 (NCTC12082_02183) sidP 2418193..2421066 (+) 2874 WP_126339330.1 Dot/Icm T4SS effector PI-3-phosphatase SidP -
  EL239_RS10755 (NCTC12082_02184) dapB 2421384..2422121 (-) 738 WP_126339331.1 4-hydroxy-tetrahydrodipicolinate reductase -
  EL239_RS10760 (NCTC12082_02185) - 2422191..2422388 (-) 198 WP_058483986.1 hypothetical protein -
  EL239_RS10765 (NCTC12082_02186) rocC 2422654..2423337 (+) 684 WP_126339332.1 ProQ/FinO family protein Regulator
  EL239_RS10770 (NCTC12082_02187) pyk 2423650..2425077 (-) 1428 WP_126339333.1 pyruvate kinase -
  EL239_RS10775 (NCTC12082_02188) - 2425058..2426248 (-) 1191 WP_126339334.1 phosphoglycerate kinase -
  EL239_RS10780 (NCTC12082_02189) gap 2426259..2427251 (-) 993 WP_126339335.1 type I glyceraldehyde-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25910.60 Da        Isoelectric Point: 10.8119

>NTDB_id=1122413 EL239_RS10765 WP_126339332.1 2422654..2423337(+) (rocC) [Legionella spiritensis strain NCTC12082]
MRRRQELHPRTAVINKTQKNKARKARHDALSWLAATFPQAFDNSIRIRPLKKGIMADILEYAVQAEEAGISKAKLREAVV
IFTRRLDYLACLKAREIRVDLQGDPVNAVTDEEAERAAVKIKRRIEKSLRNARQEQPAKQAPSQGEDRFNRMAGQKQECS
PTMEYNTGFPDRPPAFSSMQSAATQINNRTPTVIKHRTSKSYDPEAIARLKEKLGLSRRDEKQKETT

Nucleotide


Download         Length: 684 bp        

>NTDB_id=1122413 EL239_RS10765 WP_126339332.1 2422654..2423337(+) (rocC) [Legionella spiritensis strain NCTC12082]
ATGAGAAGAAGACAAGAGCTTCATCCTCGTACAGCAGTAATTAATAAAACACAAAAAAACAAAGCCCGCAAAGCACGCCA
TGACGCACTTTCCTGGCTTGCCGCCACCTTCCCGCAGGCTTTTGATAATTCCATTAGAATCAGACCGCTGAAAAAAGGCA
TTATGGCTGACATTCTGGAGTATGCCGTGCAGGCGGAGGAAGCCGGTATATCCAAAGCCAAGTTGCGAGAGGCGGTAGTC
ATTTTTACGCGTCGTCTGGATTATCTGGCATGCCTGAAGGCTCGGGAAATCCGCGTTGACTTGCAAGGTGATCCGGTGAA
TGCCGTGACAGATGAGGAAGCAGAACGTGCTGCCGTTAAAATCAAACGGCGTATAGAAAAGAGTTTGCGTAACGCTCGCC
AGGAACAACCGGCGAAACAGGCTCCTTCACAAGGAGAAGACCGGTTTAATCGGATGGCTGGCCAGAAGCAGGAATGTTCG
CCAACGATGGAATATAATACGGGTTTTCCTGACCGTCCGCCTGCGTTTAGTTCTATGCAAAGTGCTGCAACCCAAATTAA
TAATCGTACTCCGACCGTTATCAAACACAGGACTTCCAAATCCTATGATCCGGAAGCGATTGCCCGTTTGAAGGAAAAAT
TGGGTCTGTCACGTCGTGACGAGAAGCAAAAGGAAACGACCTAG

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(26-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

55.603

100

0.568

Multiple sequence alignment