Detailed information NTG0112235

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: BW25113_RS20410
• Genome accession: NZ_CP009273
• Coordinates: 4113359..4114384 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli BW25113 strain K-12
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4108359..4119384

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BW25113_RS20380 (BW25113_3928)	zapB	4108443..4108688 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
BW25113_RS20385 (BW25113_3929)	rraA	4108773..4109258 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
BW25113_RS20390 (BW25113_3930)	menA	4109351..4110277 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
BW25113_RS20395 (BW25113_3931)	hslU	4110344..4111675 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
BW25113_RS20400 (BW25113_3932)	hslV	4111685..4112215 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
BW25113_RS20405 (BW25113_3933)	ftsN	4112308..4113267 (-)	960	WP_000068828.1	cell division protein FtsN	-
BW25113_RS20410 (BW25113_3934)	cytR	4113359..4114384 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
BW25113_RS20415 (BW25113_3935)	priA	4114540..4116738 (-)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
BW25113_RS20420 (BW25113_3936)	rpmE	4116941..4117153 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
BW25113_RS20425 (BW25113_3937)	yiiX	4117214..4117822 (-)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
BW25113_RS20430 (BW25113_3938)	metJ	4118006..4118323 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=112235 BW25113_RS20410 WP_000644904.1 4113359..4114384(-) (cytR) [Escherichia coli BW25113 strain K-12]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=112235 BW25113_RS20410 WP_000644904.1 4113359..4114384(-) (cytR) [Escherichia coli BW25113 strain K-12]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628