Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EL167_RS11685 Genome accession   NZ_LR134360
Coordinates   2432332..2433702 (-) Length   456 a.a.
NCBI ID   WP_047131422.1    Uniprot ID   A0A143PAV0
Organism   Staphylococcus condimenti strain NCTC13827     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2427332..2438702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL167_RS11670 (NCTC13827_02410) cysE 2428566..2429195 (-) 630 WP_174221515.1 serine O-acetyltransferase -
  EL167_RS11675 (NCTC13827_02412) gltX 2429498..2430952 (-) 1455 WP_047131420.1 glutamate--tRNA ligase -
  EL167_RS11680 (NCTC13827_02413) - 2431243..2432301 (-) 1059 WP_047131421.1 PIN/TRAM domain-containing protein -
  EL167_RS11685 (NCTC13827_02414) radA 2432332..2433702 (-) 1371 WP_047131422.1 DNA repair protein RadA Machinery gene
  EL167_RS11690 (NCTC13827_02415) - 2433963..2436428 (-) 2466 WP_047131423.1 ATP-dependent Clp protease ATP-binding subunit -
  EL167_RS11695 (NCTC13827_02416) - 2436440..2437444 (-) 1005 WP_047131424.1 protein arginine kinase -
  EL167_RS11700 (NCTC13827_02417) - 2437449..2437925 (-) 477 WP_041613068.1 UvrB/UvrC motif-containing protein -
  EL167_RS11705 (NCTC13827_02418) - 2437992..2438453 (-) 462 WP_012664206.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50271.89 Da        Isoelectric Point: 7.4017

>NTDB_id=1122263 EL167_RS11685 WP_047131422.1 2432332..2433702(-) (radA) [Staphylococcus condimenti strain NCTC13827]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIIEKKEASSGRGMRTREQTAKVTKLNQVQNETTPRIKTSSPEFDR
VLGGGIVQGSLVLIGGDPGIGKSTLLLQICSALSQNKKVLYITGEESLNQTKLRADRLDEDSSNLNVFAETDLEVIKEAV
KQTEPDLVVVDSIQTIYHPDINSAPGSVSQVRESTQILMGIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKHSGLKGVKNPSEMFLEERSTNVAGSTIVPTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLNLLMAVLEKKESYLLQQQDAYIKVAGGVRLTEPAVDLALIAAIASSFKDQPVNGMDCYVGEVGLTGEV
RRVSRIEQRVQEAAKLGFKRVIIPKTNIGGWDFPEGIQVIGVTSVHEALDFALMKR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1122263 EL167_RS11685 WP_047131422.1 2432332..2433702(-) (radA) [Staphylococcus condimenti strain NCTC13827]
TTGGCGAAGAAAAAAGTCATTTTTGAATGTATGGCATGTGGCTATCAGTCACCTAAATGGATGGGTAAATGTCCTAATTG
TGGTGCTTGGAACCAAATGGAGGAGATTATTGAGAAAAAAGAAGCTTCAAGTGGAAGAGGCATGCGTACACGTGAACAAA
CGGCAAAAGTTACTAAGCTTAACCAAGTACAAAACGAAACTACGCCTCGTATTAAAACGAGTTCTCCTGAATTCGATAGA
GTATTAGGCGGCGGTATCGTACAAGGCTCGCTTGTCTTAATTGGCGGTGACCCTGGTATTGGTAAATCAACATTGCTGCT
GCAAATTTGTTCTGCATTATCACAAAATAAAAAAGTTTTATATATAACTGGTGAAGAATCATTAAATCAAACTAAATTGC
GCGCAGACCGCTTGGATGAAGATTCAAGCAATTTGAATGTGTTTGCAGAAACTGATTTAGAAGTGATTAAGGAAGCGGTC
AAACAGACTGAACCTGATTTAGTCGTGGTGGATTCTATCCAAACAATTTATCACCCAGATATCAATTCTGCACCAGGTTC
TGTATCGCAAGTACGAGAAAGTACGCAAATTTTGATGGGGATTGCTAAACAAATGAATATTGCAACTTTCATTGTGGGTC
ACGTGACTAAAGAAGGTCAGATAGCAGGCCCAAGATTGCTTGAGCATATGGTGGATACTGTACTGTATTTCGAAGGTGAC
GAACATCATGCGTATCGTATTTTGCGAGCAGTTAAAAACCGTTTTGGTTCTACAAATGAAATGGGTATTTTCGAAATGAA
ACATAGTGGATTAAAAGGTGTAAAAAATCCATCGGAAATGTTTTTAGAAGAACGTTCAACTAATGTTGCAGGTTCTACTA
TTGTTCCGACTATGGAAGGAACACGACCGCTGTTGATCGAAGTACAAGCTTTAGTAACTCCTACAACCTTCAATAACCCG
AGACGTATGGCAACAGGTATTGACCATAATCGTTTGAATTTATTGATGGCTGTACTGGAGAAAAAAGAAAGTTATTTATT
GCAGCAGCAAGATGCATATATCAAAGTAGCAGGAGGGGTCAGATTGACTGAACCAGCTGTTGACTTAGCTCTGATTGCTG
CAATTGCTTCTAGTTTTAAAGATCAACCTGTAAATGGCATGGATTGTTATGTGGGTGAGGTTGGTTTAACAGGTGAAGTT
CGCCGTGTTTCACGTATTGAACAGCGAGTACAAGAAGCAGCAAAACTTGGATTCAAACGTGTAATCATCCCTAAAACAAA
TATCGGCGGTTGGGATTTTCCTGAAGGTATTCAAGTGATCGGCGTGACAAGTGTGCATGAAGCGCTGGATTTCGCATTAA
TGAAACGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-219)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143PAV0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.228

100

0.662
  radA Streptococcus pneumoniae Rx1

60.579

98.465

0.596
  radA Streptococcus pneumoniae D39

60.579

98.465

0.596
  radA Streptococcus pneumoniae R6

60.579

98.465

0.596
  radA Streptococcus pneumoniae TIGR4

60.579

98.465

0.596
  radA Streptococcus mitis NCTC 12261

60.579

98.465

0.596
  radA Streptococcus mitis SK321

60.579

98.465

0.596

Multiple sequence alignment