Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   EL175_RS00940 Genome accession   NZ_LR134344
Coordinates   217030..218913 (-) Length   627 a.a.
NCBI ID   WP_003811589.1    Uniprot ID   A0A6I1DTT3
Organism   Bifidobacterium bifidum strain NCTC13001     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 212030..223913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL175_RS10135 - 215039..215773 (-) 735 Protein_165 ATP-binding cassette domain-containing protein -
  EL175_RS10140 - 215945..216979 (-) 1035 Protein_166 ABC transporter ATP-binding protein -
  EL175_RS00940 (NCTC13001_00190) rcrP 217030..218913 (-) 1884 WP_003811589.1 ABC transporter ATP-binding protein Regulator
  EL175_RS00945 (NCTC13001_00191) - 219132..219662 (-) 531 WP_003811587.1 MarR family transcriptional regulator -
  EL175_RS00950 - 219867..220154 (+) 288 WP_003811585.1 DUF1778 domain-containing protein -
  EL175_RS00960 (NCTC13001_00192) - 220541..221533 (-) 993 WP_017143196.1 aldo/keto reductase -
  EL175_RS09750 (NCTC13001_00193) - 221769..221924 (-) 156 WP_020372719.1 LPXTG cell wall anchor domain-containing protein -
  EL175_RS10145 (NCTC13001_00194) - 221921..222637 (-) 717 WP_309485088.1 DUF5011 domain-containing protein -
  EL175_RS00970 (NCTC13001_00195) - 222560..222730 (+) 171 Protein_173 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 627 a.a.        Molecular weight: 68126.81 Da        Isoelectric Point: 6.0532

>NTDB_id=1122088 EL175_RS00940 WP_003811589.1 217030..218913(-) (rcrP) [Bifidobacterium bifidum strain NCTC13001]
MLRILKYLSKAEIGQMLIALVTIVGQVFFDLKLPDYMSDITTLVETPGSAMSDIWIAGGKMLLISLGSVACAIVTGYISA
RVGSSFTQRLRSLEFRKVESYGPAEMSKFSTASLITRSTNDITQIQMFITIGLQLIVKSPIMAVWAICKIAGEGFEWTLA
TGIAVVILLVAVVIMMAMVMPKFKAMQKLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKDLTDTQLFTNRVMAF
MMPLMNTVLNGLMLAVYWIGAYLIDAAGLTDKLNVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRVLEVFDTD
PIVKTGTKTAADVARLGGGKTGTVEFRNVSFTYPGSREATLEGIDFTAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAG
QVLVDGVDVREYDLKALRDKIGYVPQQSVLFKGTVASNVSYGDDVNGASSADVEMADTSTPAGRKREAELIAAGKRAEGA
AMPTEQMNRVKAAAGVAQATEFVERMDGTYTAPIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVR
DALAKEAKGSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHQELLDTCDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1884 bp        

>NTDB_id=1122088 EL175_RS00940 WP_003811589.1 217030..218913(-) (rcrP) [Bifidobacterium bifidum strain NCTC13001]
ATGCTTCGCATCCTGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCCCTGGTGACCATCGTCGGGCAGGT
CTTCTTCGACCTCAAACTGCCCGATTACATGTCAGACATCACCACGCTCGTCGAGACGCCGGGCAGCGCGATGAGCGACA
TCTGGATCGCCGGCGGCAAGATGCTGCTCATCTCCCTCGGCTCCGTCGCCTGTGCCATCGTCACCGGCTACATCTCCGCA
CGCGTCGGCTCGTCATTCACCCAGCGCCTGCGCTCGCTCGAATTCCGCAAGGTCGAATCCTATGGCCCCGCCGAAATGAG
CAAATTCTCCACCGCGAGCCTCATCACCCGCTCCACCAACGACATCACGCAGATCCAGATGTTCATCACCATCGGCCTGC
AGCTCATCGTCAAGTCGCCGATCATGGCCGTATGGGCCATATGCAAGATCGCCGGCGAAGGTTTCGAATGGACTCTCGCC
ACCGGCATCGCCGTCGTCATCCTGCTCGTCGCCGTCGTCATCATGATGGCCATGGTCATGCCCAAGTTCAAGGCCATGCA
GAAGCTCACCGACAACATCAACCTCGTGGCCCGCGAAAACCTCACCGGCCTGCGCGTCGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAGGCCAAGTTCACCAAGGCCAACAAGGACCTCACCGACACGCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGCTGATGAACACCGTCCTGAACGGCCTGATGCTCGCCGTCTACTGGATCGGTGCCTATCTGATCGACGCCGC
CGGCCTGACGGACAAGCTCAACGTGTTCTCCAACATGGTCGTCTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTGATGAGCATGGTATTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAACGCGTGCTCGAAGTGTTCGACACCGAT
CCGATCGTCAAAACCGGCACCAAGACCGCCGCCGACGTGGCGCGTCTGGGCGGCGGGAAAACCGGCACCGTCGAGTTCCG
CAATGTGAGCTTCACCTACCCCGGCTCACGCGAGGCGACGCTCGAAGGCATCGACTTCACCGCCGAAAAGGGCCAGACCG
TCGCGTTCATCGGCTCCACCGGCTCCGGCAAGTCCAGCCTCATCAACCTCGTGCCGCGCTTCTACGACGTGTCGGCCGGG
CAGGTGCTCGTCGACGGTGTGGACGTGCGCGAATACGATCTGAAAGCCCTTCGCGACAAGATCGGATACGTGCCGCAGCA
GTCCGTGCTGTTCAAGGGCACGGTCGCATCCAACGTGAGCTACGGCGACGACGTGAACGGGGCAAGCTCCGCGGACGTCG
AAATGGCCGACACCTCCACTCCGGCCGGCCGCAAACGCGAAGCCGAACTCATCGCCGCGGGCAAGAGAGCGGAAGGCGCC
GCAATGCCGACTGAACAGATGAACCGGGTCAAGGCGGCGGCCGGCGTCGCTCAGGCCACCGAGTTCGTCGAGCGCATGGA
CGGCACATACACCGCCCCGATCGCACAAGGCGGGTCCAACGTCTCCGGCGGCCAGAAGCAGCGCCTGTCAATCGCGCGCG
CCGTCTACCGCCACCCCGAAATCCTGATCTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTTCGC
GACGCACTCGCCAAAGAAGCCAAGGGATCCACCAAGCTCATCGTCGCCCAGCGCATCGGCACGATCATGAACGCCGACCG
CATCATCGTGCTCGATGACGGCAAGGTCGTCGGCCAAGGCACCCATCAGGAACTGCTCGACACCTGCGATGTCTACCGTC
AGATCGCCGAATCCCAGCTCAGTCAGTCGGAACTGACCGCGTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-292)

ABC transporter (ABC_tran)

(361-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1DTT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

47.41

100

0.482

Multiple sequence alignment