Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   EL162_RS07165 Genome accession   NZ_LR134343
Coordinates   1574537..1575478 (-) Length   313 a.a.
NCBI ID   WP_126331100.1    Uniprot ID   A0A3S4SD46
Organism   Moraxella cuniculi strain NCTC10297     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1569537..1580478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL162_RS07145 (NCTC10297_01456) purF 1570380..1571909 (-) 1530 WP_076555903.1 amidophosphoribosyltransferase -
  EL162_RS07150 (NCTC10297_01457) - 1572042..1572554 (-) 513 WP_126331096.1 CvpA family protein -
  EL162_RS07155 (NCTC10297_01458) - 1572570..1573610 (-) 1041 WP_076555901.1 quinone-dependent dihydroorotate dehydrogenase -
  EL162_RS07160 (NCTC10297_01459) - 1574006..1574527 (-) 522 WP_126331098.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  EL162_RS07165 (NCTC10297_01460) pilA 1574537..1575478 (-) 942 WP_126331100.1 signal recognition particle-docking protein FtsY Machinery gene
  EL162_RS10310 (NCTC10297_01461) - 1575714..1575842 (+) 129 WP_259772315.1 hypothetical protein -
  EL162_RS07170 (NCTC10297_01462) - 1575852..1577237 (+) 1386 WP_126331102.1 pitrilysin family protein -
  EL162_RS07175 (NCTC10297_01463) - 1577253..1578755 (+) 1503 WP_126331104.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 33739.53 Da        Isoelectric Point: 4.9892

>NTDB_id=1122086 EL162_RS07165 WP_126331100.1 1574537..1575478(-) (pilA) [Moraxella cuniculi strain NCTC10297]
MSENEQGGWFARMKAGLAKSSKNLSEGLVSVLVGGKQIDDELLEEIEDQLLVADIGVNATNRIISNLTEQTARGDLIYSH
ALYKALKSELHDILTPKVQPLEIDNSKKPFVILMVGVNGVGKTTTIGKLAKRLQAEGKSVMLAAGDTFRAAATEQLQIWG
ERNHIPVVAQGHGADSASVIFDAMQSAKARGIDVLIADTAGRLQNKTHLMNELEKVVRVIKKADETAPHETMIVLDAGTG
QNAINQVQVFSEAVHLTGISITKLDGTAKGGVVFNIAQNTEIPIRFIGVGEGIDDLQPFEPKEFVDALLEKDE

Nucleotide


Download         Length: 942 bp        

>NTDB_id=1122086 EL162_RS07165 WP_126331100.1 1574537..1575478(-) (pilA) [Moraxella cuniculi strain NCTC10297]
ATGAGCGAAAACGAACAAGGCGGTTGGTTTGCCCGCATGAAAGCAGGGCTTGCCAAATCCAGCAAAAATCTGTCCGAAGG
GCTGGTCAGTGTGTTGGTTGGTGGTAAGCAAATTGATGATGAATTGTTAGAAGAAATTGAAGATCAGCTGTTGGTTGCTG
ATATTGGCGTCAATGCCACCAATCGCATTATTAGCAATCTCACCGAACAAACCGCTCGTGGTGATTTGATTTATTCGCAT
GCCTTATATAAGGCACTCAAGTCTGAACTGCACGACATTTTAACCCCCAAGGTTCAACCGCTTGAGATTGACAATAGCAA
AAAACCATTTGTTATCCTGATGGTTGGTGTCAATGGCGTTGGCAAAACCACCACCATCGGCAAACTCGCCAAAAGACTAC
AAGCCGAAGGTAAGTCGGTCATGCTTGCCGCTGGCGATACCTTTCGTGCTGCCGCTACCGAACAGCTACAAATATGGGGC
GAACGCAACCATATTCCTGTGGTGGCACAAGGCCATGGTGCCGACAGTGCTTCGGTGATTTTTGACGCCATGCAGTCAGC
AAAAGCACGCGGCATTGATGTGCTGATTGCCGATACAGCAGGGCGATTGCAGAATAAAACTCATCTGATGAATGAGCTTG
AAAAGGTTGTCCGTGTCATCAAAAAAGCTGACGAAACTGCACCGCATGAGACCATGATTGTGCTAGATGCTGGCACAGGT
CAAAATGCCATCAATCAGGTGCAGGTTTTTTCAGAGGCGGTGCATTTGACAGGCATCAGTATCACTAAGCTAGACGGCAC
TGCCAAGGGCGGTGTGGTATTTAATATCGCCCAAAATACCGAAATTCCCATTCGCTTTATTGGCGTGGGCGAGGGGATTG
ATGACCTACAGCCCTTTGAGCCCAAAGAGTTTGTCGATGCTTTGCTTGAAAAAGACGAATAG

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(109-309)

SRP54-type protein, helical bundle domain (SRP54_N)

(26-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S4SD46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

53.398

98.722

0.527

Multiple sequence alignment