Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   EL268_RS30935 Genome accession   NZ_LR134338
Coordinates   6381989..6382942 (-) Length   317 a.a.
NCBI ID   WP_106654972.1    Uniprot ID   A0A542RKA3
Organism   Brevibacillus brevis strain NCTC2611     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6376989..6387942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL268_RS30900 (NCTC2611_06338) - 6377112..6377546 (+) 435 WP_106654966.1 hypothetical protein -
  EL268_RS30905 (NCTC2611_06339) - 6377534..6377827 (+) 294 WP_106654967.1 YxcD family protein -
  EL268_RS30910 (NCTC2611_06340) - 6378004..6378867 (+) 864 WP_106654968.1 ABC transporter ATP-binding protein -
  EL268_RS30920 (NCTC2611_06342) - 6379206..6380192 (-) 987 WP_106654969.1 siderophore ABC transporter substrate-binding protein -
  EL268_RS30925 (NCTC2611_06343) - 6380299..6381057 (-) 759 WP_106654970.1 ABC transporter ATP-binding protein -
  EL268_RS30930 (NCTC2611_06344) - 6381054..6381992 (-) 939 WP_106654971.1 iron chelate uptake ABC transporter family permease subunit -
  EL268_RS30935 (NCTC2611_06345) ceuB 6381989..6382942 (-) 954 WP_106654972.1 ABC transporter permease Machinery gene
  EL268_RS30940 (NCTC2611_06346) - 6383195..6383959 (-) 765 WP_106654973.1 DUF4097 family beta strand repeat-containing protein -
  EL268_RS30945 (NCTC2611_06347) - 6384270..6384626 (+) 357 WP_106654974.1 response regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35121.41 Da        Isoelectric Point: 9.7952

>NTDB_id=1121958 EL268_RS30935 WP_106654972.1 6381989..6382942(-) (ceuB) [Brevibacillus brevis strain NCTC2611]
MKKRYLVVALILLSFVSLFIGVKNISPWDLFNLTDDKVQVLWISRIPRLISIIIAGISMSIVGLIMQQLTRNKFVSPTTA
GTEDSVRFGILISLLVFVDAGPWVKLLVAFAFSLLGTFIFMKILDRIKFKDSIFIPLVGLMFGNIVGSITTFFAYKHDLM
QNMSAWLHGDFSTIMKGSYELLYISIPLVIIAYLYANKFTIAGMGEEFAINLGLNYKQVVNIGLIIVACVTSVVILTVGA
IPFLGLIIPNLVTLYLGDNLKKSLSHTALLGAVFVLACDILGRLIIFPYEISIGLMVGVIGSGIFVYLLMRRKAYEQ

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1121958 EL268_RS30935 WP_106654972.1 6381989..6382942(-) (ceuB) [Brevibacillus brevis strain NCTC2611]
ATGAAAAAGAGATATTTGGTTGTAGCACTTATTTTGCTCTCGTTCGTTTCACTTTTTATAGGTGTCAAAAATATATCGCC
ATGGGATCTGTTCAATCTCACGGATGACAAAGTGCAAGTGCTGTGGATCAGCCGGATTCCGCGATTAATCAGTATCATCA
TCGCAGGGATAAGCATGAGTATCGTCGGCTTGATCATGCAGCAGCTGACCCGAAACAAGTTTGTTTCTCCCACGACTGCG
GGGACAGAGGATTCCGTTCGCTTTGGAATTTTGATCTCTCTCTTGGTATTCGTCGATGCCGGTCCATGGGTAAAACTGCT
CGTTGCTTTTGCTTTTTCTCTCTTGGGAACATTTATCTTTATGAAGATCCTTGACCGAATCAAATTCAAGGACTCCATTT
TTATCCCGTTGGTGGGATTGATGTTTGGAAATATCGTCGGTTCCATTACGACGTTTTTCGCTTATAAACACGATTTGATG
CAAAACATGTCTGCTTGGTTGCATGGAGATTTCTCTACCATTATGAAAGGCAGCTACGAGCTTTTGTACATAAGCATTCC
GCTGGTGATTATCGCCTACTTGTACGCGAACAAGTTCACGATTGCCGGAATGGGTGAGGAGTTTGCTATCAACCTCGGGT
TGAATTACAAGCAGGTCGTCAATATCGGACTGATCATCGTTGCTTGTGTGACATCGGTTGTGATTCTCACGGTAGGTGCG
ATTCCGTTTTTGGGGCTCATTATTCCGAATCTGGTTACGCTGTACCTGGGAGACAACCTGAAGAAAAGCTTGTCTCATAC
CGCTTTGCTTGGCGCGGTGTTTGTACTGGCCTGTGATATCCTGGGACGCCTCATCATCTTCCCGTACGAGATTTCCATCG
GCTTGATGGTTGGGGTCATAGGCAGCGGGATATTCGTGTACTTACTCATGAGAAGAAAGGCATATGAACAATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A542RKA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.272

98.738

0.546

Multiple sequence alignment