Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   EL140_RS08370 Genome accession   NZ_LR134336
Coordinates   1688323..1690092 (-) Length   589 a.a.
NCBI ID   WP_000731803.1    Uniprot ID   -
Organism   Streptococcus oralis ATCC 35037 strain NCTC 11427     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1683323..1695092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL140_RS08340 (NCTC11427_01645) - 1683922..1684287 (-) 366 WP_000216434.1 Asp23/Gls24 family envelope stress response protein -
  EL140_RS08345 (NCTC11427_01646) rpmB 1684440..1684628 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  EL140_RS08350 (NCTC11427_01647) - 1684733..1685407 (-) 675 WP_000725743.1 LiaF transmembrane domain-containing protein -
  EL140_RS08355 (NCTC11427_01648) - 1685413..1685859 (-) 447 WP_000776577.1 LytTR family DNA-binding domain-containing protein -
  EL140_RS08360 (NCTC11427_01649) - 1685973..1686476 (-) 504 WP_000800954.1 phosphatase PAP2 family protein -
  EL140_RS08365 (NCTC11427_01650) rcrQ 1686573..1688333 (-) 1761 WP_000428385.1 ABC transporter ATP-binding protein Regulator
  EL140_RS08370 (NCTC11427_01651) rcrP 1688323..1690092 (-) 1770 WP_000731803.1 ABC transporter ATP-binding protein Regulator
  EL140_RS08375 (NCTC11427_01652) - 1690076..1690537 (-) 462 WP_000360517.1 MarR family winged helix-turn-helix transcriptional regulator -
  EL140_RS08380 (NCTC11427_01653) - 1690731..1691435 (+) 705 WP_000675584.1 CD20-like domain-containing protein -
  EL140_RS08385 (NCTC11427_01654) - 1691486..1692202 (-) 717 WP_000532891.1 YebC/PmpR family DNA-binding transcriptional regulator -
  EL140_RS08390 (NCTC11427_01655) - 1692299..1693669 (-) 1371 WP_002874864.1 MATE family efflux transporter -
  EL140_RS08395 (NCTC11427_01656) - 1693779..1694333 (+) 555 WP_000060285.1 GNAT family N-acetyltransferase -
  EL140_RS08400 (NCTC11427_01657) - 1694464..1694658 (-) 195 WP_000415528.1 PspC domain-containing protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65424.79 Da        Isoelectric Point: 6.4156

>NTDB_id=1121864 EL140_RS08370 WP_000731803.1 1688323..1690092(-) (rcrP) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MKKLAKRITGKEWGMIVLTILFTCFSVYLELEVPTYISQITELLGTSGTQLGELWSPAAKMIGLSLLAFFSSVMVGFFAA
RVAASYTTHLRRDVFHRVLDFSQTEIKRFSIPSLLTRTTNDITQVQMLFTMGLQVVTRGPIMAIWAIGKILGKSEYWLWA
VVVAVIVNVLMTTVLMTLAFPKQSVIQKLTDKLNSITRESLTGIRVVRAYNAEDYQDEKFEAANDEVTRLNLFVNRLMAI
MNPIMMAISSGLSLAIYWIGAYIINDASLAERLPLFSDMVVFMSYAMQVVMGFLLMGALFIVLPRTLVSAGRINQVLDLH
SSIENPSHTQTADPSVQGQVEFRDVTFRYSKNSEAVVEHVTFKAEAGQTVAFIGSTGSGKSTLVNLLPRFYDVSDGQILV
DGVNVQDYDLEDLRNKVGYIPQKAVLFSGDVKGNLDFGKSKETPLSEAAMWQSLELAQSKSFIEDKEAGLASEVAQGGTN
FSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRVLRQELAEKTKSMTKLIVAQRISTIMDADLILVLDQGKVVGQG
THKELLATNEVYQEIAYSQLSKEELEHGK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=1121864 EL140_RS08370 WP_000731803.1 1688323..1690092(-) (rcrP) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
ATGAAGAAACTCGCTAAACGTATTACAGGAAAAGAGTGGGGAATGATTGTCCTTACGATTCTGTTCACTTGTTTCTCGGT
CTATCTCGAGTTAGAGGTGCCGACTTATATTTCGCAAATTACAGAATTACTGGGAACGTCTGGAACGCAGTTGGGTGAAC
TCTGGTCACCAGCTGCGAAGATGATTGGTTTGTCTTTATTGGCTTTCTTTTCATCTGTTATGGTGGGTTTCTTTGCTGCT
CGTGTTGCAGCATCCTATACAACCCATCTACGTAGAGACGTATTTCATCGCGTTTTAGATTTTTCACAGACAGAGATCAA
GCGCTTTTCAATCCCAAGTCTTTTGACTCGGACGACCAATGATATTACCCAGGTACAGATGCTCTTTACCATGGGCTTGC
AAGTGGTTACTCGTGGGCCGATTATGGCTATCTGGGCCATTGGAAAAATCCTTGGGAAATCGGAATACTGGCTCTGGGCG
GTCGTTGTGGCTGTTATTGTCAATGTCTTGATGACCACTGTTCTTATGACTCTGGCCTTTCCAAAACAATCTGTTATCCA
AAAATTGACAGATAAACTCAATAGCATCACTCGTGAAAGCTTGACTGGGATTCGAGTTGTTCGCGCATACAATGCCGAAG
ATTACCAAGATGAAAAATTCGAAGCAGCCAACGATGAGGTAACACGTCTCAATCTCTTTGTCAATCGATTGATGGCCATT
ATGAACCCGATTATGATGGCGATTTCCAGTGGACTAAGTTTAGCTATTTACTGGATTGGTGCCTACATTATCAACGATGC
AAGTTTGGCAGAACGTCTGCCACTCTTTAGTGATATGGTGGTCTTCATGTCCTATGCTATGCAGGTCGTGATGGGATTCC
TTCTCATGGGAGCACTCTTTATTGTTCTTCCTCGTACCTTGGTTTCGGCAGGACGTATCAATCAAGTATTGGATCTGCAT
TCTTCTATTGAAAATCCTAGTCATACACAGACAGCGGATCCTTCAGTTCAAGGACAAGTGGAATTCCGCGATGTAACCTT
CCGCTACTCTAAAAACTCAGAAGCAGTCGTGGAACATGTCACTTTCAAAGCAGAAGCGGGTCAAACCGTAGCCTTCATCG
GATCGACTGGATCAGGTAAGTCTACGCTTGTCAACCTCTTGCCACGTTTTTACGACGTTTCAGATGGACAAATCCTAGTG
GACGGAGTTAATGTGCAAGATTACGATTTGGAAGATTTGCGCAATAAGGTCGGCTATATCCCTCAAAAAGCAGTCCTCTT
CTCAGGAGATGTCAAGGGGAACTTGGACTTTGGTAAGAGCAAAGAAACTCCTCTAAGCGAAGCTGCTATGTGGCAATCCT
TGGAATTGGCCCAGTCTAAAAGCTTCATCGAAGACAAGGAAGCAGGTCTTGCATCAGAAGTGGCTCAAGGCGGAACCAAC
TTCTCAGGAGGTCAAAGACAGCGTTTAGCCATTGCGCGTGCCTTGGCTCGTAAACCAGAGATTCTCATCTTTGATGATTC
CTTCTCAGCCTTGGACTACAAGACAGATCGTGTCCTTCGCCAAGAGCTAGCTGAGAAAACAAAATCCATGACCAAGCTCA
TCGTAGCGCAACGGATTTCTACCATTATGGACGCCGACCTGATCTTAGTTTTGGATCAAGGTAAAGTCGTGGGACAAGGC
ACCCACAAGGAACTTCTTGCAACCAACGAAGTCTACCAAGAAATTGCCTACTCACAACTATCGAAGGAGGAATTGGAACA
TGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(358-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

65.225

100

0.666

Multiple sequence alignment