Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EL140_RS08365 Genome accession   NZ_LR134336
Coordinates   1686573..1688333 (-) Length   586 a.a.
NCBI ID   WP_000428385.1    Uniprot ID   -
Organism   Streptococcus oralis ATCC 35037 strain NCTC 11427     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1681573..1693333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL140_RS08335 (NCTC11427_01644) - 1682252..1683919 (-) 1668 WP_000036690.1 DAK2 domain-containing protein -
  EL140_RS08340 (NCTC11427_01645) - 1683922..1684287 (-) 366 WP_000216434.1 Asp23/Gls24 family envelope stress response protein -
  EL140_RS08345 (NCTC11427_01646) rpmB 1684440..1684628 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  EL140_RS08350 (NCTC11427_01647) - 1684733..1685407 (-) 675 WP_000725743.1 LiaF transmembrane domain-containing protein -
  EL140_RS08355 (NCTC11427_01648) - 1685413..1685859 (-) 447 WP_000776577.1 LytTR family DNA-binding domain-containing protein -
  EL140_RS08360 (NCTC11427_01649) - 1685973..1686476 (-) 504 WP_000800954.1 phosphatase PAP2 family protein -
  EL140_RS08365 (NCTC11427_01650) rcrQ 1686573..1688333 (-) 1761 WP_000428385.1 ABC transporter ATP-binding protein Regulator
  EL140_RS08370 (NCTC11427_01651) rcrP 1688323..1690092 (-) 1770 WP_000731803.1 ABC transporter ATP-binding protein Regulator
  EL140_RS08375 (NCTC11427_01652) - 1690076..1690537 (-) 462 WP_000360517.1 MarR family winged helix-turn-helix transcriptional regulator -
  EL140_RS08380 (NCTC11427_01653) - 1690731..1691435 (+) 705 WP_000675584.1 CD20-like domain-containing protein -
  EL140_RS08385 (NCTC11427_01654) - 1691486..1692202 (-) 717 WP_000532891.1 YebC/PmpR family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64485.16 Da        Isoelectric Point: 5.1159

>NTDB_id=1121863 EL140_RS08365 WP_000428385.1 1686573..1688333(-) (rcrQ) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MENKKVSVWKQCKPYMAGLQLPLLIAVVAAVISSIITVYGPTKIKEITNLISDGLATEIDLVAVSNIAGFLVVLYVFGAI
LNYTQAYIFSTSIQHFSKRLRTAIAEKINRLPLGYFDRHSQGDTLSRVTNDVDTAAQSLNQSLGTVLSASFLLIAVLVTM
FGMNWILALVTVVSTLVGFAAVSVIMAKSQGYFKAQQNNLAAVNGYVEEMYSGHNVVTSYNAVDTSKARFAGLNQDLHDS
IWKSQFISGIMMPAMFFVGNFSYVLVIIVGAALALEGHITIGIIVAFMVYVRTFSQPLSQIAQGITSLQQASAAMTRVLE
FLAEAEMQDESHKERQLSDMKGEVVFDHVSFGYTPERTIIHDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYELDKGS
IRIDGVDTKDMKRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQTGISDERMIEASKAVGIHHFIMTLPDGYDTVLDDTVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HEELMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=1121863 EL140_RS08365 WP_000428385.1 1686573..1688333(-) (rcrQ) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
ATGGAAAATAAAAAAGTTTCGGTCTGGAAACAGTGCAAACCTTATATGGCAGGCCTCCAACTTCCTCTCCTAATAGCAGT
TGTGGCTGCAGTCATTTCAAGCATCATTACCGTTTATGGTCCAACTAAGATTAAAGAAATTACTAACTTGATTTCAGATG
GCTTGGCTACAGAAATCGACTTGGTAGCTGTGTCAAACATTGCTGGATTTTTGGTTGTCCTATATGTGTTTGGAGCTATC
CTTAATTATACACAGGCCTATATATTTTCAACGAGTATCCAACATTTTTCAAAACGCTTGCGGACGGCTATCGCTGAAAA
AATCAATCGTTTGCCACTTGGCTATTTTGACCGTCATTCACAAGGAGACACCCTTTCGCGCGTGACCAATGATGTGGATA
CAGCAGCGCAATCTCTCAACCAAAGTCTAGGGACAGTTCTTTCAGCTAGTTTCTTGTTGATTGCTGTCTTGGTGACCATG
TTTGGGATGAACTGGATTTTAGCTCTCGTAACAGTGGTCTCTACGCTTGTTGGTTTTGCGGCGGTTTCCGTAATCATGGC
CAAGTCACAGGGTTATTTTAAAGCCCAACAAAATAATCTAGCAGCCGTCAATGGTTATGTGGAAGAGATGTACTCTGGCC
ATAATGTAGTGACCAGCTACAACGCAGTGGACACCTCCAAAGCGAGATTTGCAGGGTTAAACCAAGACTTGCATGACAGT
ATCTGGAAATCTCAATTTATCTCTGGTATCATGATGCCAGCCATGTTCTTTGTTGGGAACTTTAGTTATGTCTTAGTCAT
CATCGTTGGGGCCGCGCTGGCGTTAGAAGGGCATATCACTATAGGGATTATCGTAGCCTTTATGGTTTACGTACGGACCT
TCTCCCAACCTCTGTCACAGATTGCCCAAGGGATTACGAGCCTGCAACAAGCGAGTGCAGCCATGACTCGTGTATTAGAA
TTTCTAGCTGAAGCTGAGATGCAGGATGAATCTCATAAGGAGAGACAATTGAGCGACATGAAAGGGGAAGTAGTCTTTGA
TCACGTGTCCTTTGGCTATACACCAGAGCGCACCATCATCCATGATTTTTCTGCGACAGCTCATGCAGGTCAAAAGGTCG
CAATCGTTGGACCGACTGGGGCTGGGAAGACAACCATTGTCAATCTTTTGATGAAGTTCTATGAGCTAGATAAGGGAAGT
ATCCGCATTGATGGTGTGGATACCAAGGACATGAAGCGCTCTGAAGTGCACGATGCCTTTTCAATGGTCTTGCAGGATAC
TTGGCTCTTTGAAGGAACCATTCGTGATAATCTCATCTACAACCAAACAGGGATTAGTGATGAACGAATGATTGAAGCCA
GCAAGGCAGTGGGAATCCACCACTTTATCATGACCTTGCCAGACGGCTACGATACGGTTTTGGATGACACTGTGACCTTG
TCTGTTGGGCAAAAACAACTCTTGACCATTGCTCGTGCACTTCTTAAGGATGCACCACTCTTGATTTTGGATGAAGCGAC
ATCTTCAGTCGACACACGTACAGAGGAGTTGATTCAAAAAGCCATGGATCGTTTGATGGAGGGTCGAACTTCCTTTGTCA
TCGCCCACCGCTTGTCAACTATCCGTAATGCTGACTTGATTCTTGTCATGAAAGATGGGAATATCATCGAACAAGGCAAT
CATGAGGAACTAATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAGTTTACAGAAGACGAAGCAGAAGAATA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(23-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.952

99.659

0.667

Multiple sequence alignment