Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   EL140_RS08110 Genome accession   NZ_LR134336
Coordinates   1616905..1617618 (+) Length   237 a.a.
NCBI ID   WP_000760677.1    Uniprot ID   -
Organism   Streptococcus oralis ATCC 35037 strain NCTC 11427     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1609019..1627940 1616905..1617618 within 0


Gene organization within MGE regions


Location: 1609019..1627940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL140_RS08070 (NCTC11427_01592) xerD 1609019..1609753 (-) 735 WP_282644648.1 site-specific tyrosine recombinase XerD -
  EL140_RS08075 (NCTC11427_01593) cbpB 1609750..1610211 (-) 462 WP_000560697.1 cyclic-di-AMP-binding protein CbpB -
  EL140_RS08080 (NCTC11427_01594) - 1610208..1610729 (-) 522 WP_001118939.1 metallophosphoesterase -
  EL140_RS08085 (NCTC11427_01595) - 1610705..1611715 (-) 1011 WP_391592434.1 nucleoside-triphosphate diphosphatase -
  EL140_RS08090 (NCTC11427_01596) racE 1611673..1612467 (-) 795 WP_000370365.1 glutamate racemase -
  EL140_RS08095 (NCTC11427_01597) - 1612673..1612918 (-) 246 WP_000364994.1 YneF family protein -
  EL140_RS08100 (NCTC11427_01598) treC 1613064..1614689 (-) 1626 WP_001162367.1 alpha,alpha-phosphotrehalase -
  EL140_RS08105 (NCTC11427_01599) treP 1614753..1616720 (-) 1968 WP_000514346.1 PTS system trehalose-specific EIIBC component -
  EL140_RS08110 (NCTC11427_01600) treR 1616905..1617618 (+) 714 WP_000760677.1 trehalose operon repressor Regulator
  EL140_RS08115 (NCTC11427_01601) - 1617871..1622994 (+) 5124 WP_000716125.1 SIALI-17 repeat-containing surface protein -
  EL140_RS08120 (NCTC11427_01602) mraY 1623064..1624044 (-) 981 WP_000625795.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  EL140_RS08125 (NCTC11427_01603) pbp2X 1624046..1626301 (-) 2256 WP_000816040.1 penicillin-binding protein PBP2X -
  EL140_RS08130 (NCTC11427_01604) ftsL 1626305..1626622 (-) 318 WP_000840795.1 cell division protein FtsL -
  EL140_RS08135 (NCTC11427_01605) rsmH 1626633..1627583 (-) 951 WP_000159388.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  EL140_RS08140 (NCTC11427_01606) - 1627746..1627940 (+) 195 WP_001082470.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27736.86 Da        Isoelectric Point: 8.2868

>NTDB_id=1121862 EL140_RS08110 WP_000760677.1 1616905..1617618(+) (treR) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MKKYQQLFKQIQKTIQNETYAVGDFLPSEHDLMNQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVQELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELVPNLTRQIAEQSIY
SYIEDNLKLLIDYAQKEITIDHTSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFHFVDFAKRHPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1121862 EL140_RS08110 WP_000760677.1 1616905..1617618(+) (treR) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
ATGAAGAAATACCAACAACTATTTAAGCAAATCCAAAAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTCCC
CAGTGAGCACGACCTCATGAATCAGTATCAGGTGAGCCGTGACACCGTCCGAAAAGCTCTGTCCCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGGGGGCAAGGTTCCCAAGTCGTCAAAGAAGAAACGGTCAATTTCCCTGTCTCCAACCTAACC
AGCTACCAAGAACTGGTCCAGGAACTTGGACTTCGCTCTAAGACTAATGTCGTCAGCCTGGACAAGATCATTATCGATAA
AAAATCCTCACTGATAACCGGCTTTCCAGAGTTTCGGATGGTTTGGAAGGTAGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCGGTTCTGGATACGGACTATCTGGATATGGAACTGGTCCCAAATCTCACTCGCCAAATCGCTGAGCAGTCTATCTAC
TCGTATATAGAGGACAACCTCAAACTCCTTATTGATTATGCTCAGAAAGAAATCACCATTGACCACACTAGCGATCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCCATCAAGTCAAAAGTCTATCTCCAAGACGGGCGCCAGT
TTCAATTCACCGAAAGTCGCCATAAATTAGAAAAATTTCACTTTGTTGACTTTGCCAAAAGACATCCGAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

57.872

99.156

0.574

Multiple sequence alignment