Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   EL140_RS07890 Genome accession   NZ_LR134336
Coordinates   1558662..1559393 (-) Length   243 a.a.
NCBI ID   WP_000889938.1    Uniprot ID   -
Organism   Streptococcus oralis ATCC 35037 strain NCTC 11427     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1553662..1564393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL140_RS07855 (NCTC11427_01552) - 1553750..1554049 (-) 300 WP_001041395.1 YlxQ-related RNA-binding protein -
  EL140_RS07860 (NCTC11427_01553) rnpM 1554042..1554335 (-) 294 WP_000857560.1 RNase P modulator RnpM -
  EL140_RS07865 (NCTC11427_01554) nusA 1554357..1555493 (-) 1137 WP_000032277.1 transcription termination factor NusA -
  EL140_RS07870 (NCTC11427_01555) rimP 1555536..1556015 (-) 480 WP_000338695.1 ribosome maturation factor RimP -
  EL140_RS07875 (NCTC11427_01556) trmB 1556142..1556777 (-) 636 WP_001266088.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  EL140_RS07880 (NCTC11427_01557) ccrZ 1556774..1557568 (-) 795 WP_000363020.1 cell cycle regulator CcrZ -
  EL140_RS07885 (NCTC11427_01558) pptB 1557616..1558665 (-) 1050 WP_000653781.1 ABC transporter permease Regulator
  EL140_RS07890 (NCTC11427_01559) pptA 1558662..1559393 (-) 732 WP_000889938.1 ABC transporter ATP-binding protein Regulator
  EL140_RS07895 (NCTC11427_01560) - 1559461..1559871 (+) 411 WP_001278311.1 HIT family protein -
  EL140_RS07900 (NCTC11427_01561) - 1559881..1560159 (+) 279 WP_000777741.1 hypothetical protein -
  EL140_RS07905 (NCTC11427_01562) - 1560223..1560882 (+) 660 WP_000782734.1 hypothetical protein -
  EL140_RS07910 (NCTC11427_01563) dnaJ 1560960..1562096 (-) 1137 WP_001066317.1 molecular chaperone DnaJ -
  EL140_RS07915 (NCTC11427_01564) dnaK 1562558..1564381 (-) 1824 WP_000034683.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27172.58 Da        Isoelectric Point: 4.7098

>NTDB_id=1121861 EL140_RS07890 WP_000889938.1 1558662..1559393(-) (pptA) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLTPYSGEIKINGLTLREDATNYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQNVAFERVESLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAQGNLQQLREAFGMPEASLNDIYLALTKE
EEL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1121861 EL140_RS07890 WP_000889938.1 1558662..1559393(-) (pptA) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
ATGTTAGAAATTAAAAACCTGACAGGAGGCTATGTTCACGTTCCTGTCTTGAAAGATGTGTCCTTTACAGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAACGGTGCTGGGAAATCAACGACTATCAATGAGATTATCGGTCTTTTGACACCTT
ACAGTGGGGAAATCAAGATTAATGGTTTGACACTGCGAGAAGATGCGACCAACTATCGCAAGCAGATTGGCTACATCCCA
GAAACGCCTAGCTTGTATGAAGAGCTGACTCTCAGAGAGCATATCGAAACGGTGGCTATGGCTTACGGTATTGAACAAAA
TGTGGCTTTTGAGCGAGTAGAATCTTTGTTAAAAATGTTTCGTTTGGATCAAAAATTAGATTGGTTTCCTGTGCATTTCT
CCAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCGAGTCTTTTCATCGTGGATGAGCCTTTT
CTTGGCCTCGATCCGCTGGCTATTTCTGACTTGATTCAGCTTTTGGAAGTAGAAAAGCAAAAAGGTAAGTCTATCCTCAT
GAGTACCCACGTGCTGGACTCGGCGGAGAAGATGTGTGACGCCTTTGTTATTCTCCACAAGGGGGAGGTGAGGGCTCAGG
GAAACCTCCAGCAACTGCGCGAAGCCTTTGGCATGCCTGAAGCGAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGAGCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

73.029

99.177

0.724
  pptA Streptococcus thermophilus LMD-9

72.199

99.177

0.716

Multiple sequence alignment