Detailed information NTG1121787

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: EL332_RS27860
• Genome accession: NZ_LR134334
• Coordinates: 6181129..6183360 (+)
• Length: 743 a.a.
• NCBI ID: WP_124323848.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain NCTC7357
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6176129..6188360

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL332_RS27835 (NCTC7357_05565)	-	6177251..6177910 (+)	660	WP_124323847.1	transglutaminase-like domain-containing protein	-
EL332_RS27840 (NCTC7357_05566)	-	6177953..6178576 (+)	624	WP_106696834.1	glutathione S-transferase family protein	-
EL332_RS27845 (NCTC7357_05567)	-	6178709..6179641 (+)	933	WP_025804356.1	ABC transporter ATP-binding protein	-
EL332_RS27850 (NCTC7357_05568)	-	6179638..6180417 (+)	780	WP_007931651.1	ABC transporter permease	-
EL332_RS27855 (NCTC7357_05569)	-	6180466..6180981 (-)	516	WP_025804355.1	DUF2062 domain-containing protein	-
EL332_RS27860 (NCTC7357_05570)	comA	6181129..6183360 (+)	2232	WP_124323848.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
EL332_RS27865 (NCTC7357_05571)	exbB	6183463..6184098 (+)	636	WP_025804353.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
EL332_RS27870 (NCTC7357_05572)	-	6184095..6184523 (+)	429	WP_009047818.1	ExbD/TolR family protein	-
EL332_RS27875 (NCTC7357_05573)	lpxK	6184523..6185533 (+)	1011	WP_102676843.1	tetraacyldisaccharide 4'-kinase	-
EL332_RS27880 (NCTC7357_05574)	-	6185557..6185742 (+)	186	WP_007931663.1	Trm112 family protein	-
EL332_RS27885 (NCTC7357_05575)	kdsB	6185739..6186503 (+)	765	WP_124302557.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
EL332_RS27890 (NCTC7357_05576)	-	6186503..6186967 (+)	465	WP_124323849.1	low molecular weight protein-tyrosine-phosphatase	-
EL332_RS27895 (NCTC7357_05577)	murB	6186964..6187983 (+)	1020	WP_025804350.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81292.40 Da
• Isoelectric Point: 10.1404

>NTDB_id=1121787 EL332_RS27860 WP_124323848.1 6181129..6183360(+) (comA) [Pseudomonas chlororaphis strain NCTC7357]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACISAQWALDDRLAEPLDGQTRWLEG
RVVGLPQQAEGLVRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPVGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATQESWRARIRQRLLQVDAQGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLAVPYLGEGLLWLAGGLLDVLFRGLALLAAQWPAWIAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWADAQNGNQKSCVMQVEAKGERLLLTGDIDAQAE
RALLNTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYAEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=1121787 EL332_RS27860 WP_124323848.1 6181129..6183360(+) (comA) [Pseudomonas chlororaphis strain NCTC7357]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTGCTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCCGTACTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCCTTTTTTCTGCTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATGGGCGCTGGACGATCGTTTGGCGGAACCGCTCGACGGACAGACCCGATGGCTTGAAGGC
CGGGTGGTGGGGCTGCCGCAGCAGGCCGAGGGCCTGGTGCGTTTCGAACTGGAAGGCGGGCGGGCGCGGCGCGGGCGGAT
CCCCCAACGCTTGCGCCTGGCCTGGTATGGCGGGCCACCGGTCCACAGCGGCGAGCGCTGGCGCCTGGCGGTGAAACTCA
AGCGGCCCGTCGGCCTGGTCAATCTGCAAGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACGGGC
ACGGTCAAGGATGGGCAGCTGCTGGCCGCGACGCAGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCAGGGGCGCGCTGGTGGCCTGGCGGCCCTGGTACTGGGTGACGGCTCGGGGCTAAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACTGGGACCGTGCATCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCCGCCGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTACCCTGGGCTTGTGGGTTGGCGTTCGCTTC
GGCCCTGGGGTACGGGTTGCTGGCGGGGTTCGATGTGCCGGTGCGTCGTGCCTGCGTGATGGTTGCCCTGGTGCTGATCT
GGCGTCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCGTTCCTGTTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATCCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGTTGGCGCTGGGTT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGTTGGCGGAACCCTGGATCAGCCTGCTGGTGTTGCCGCCGGCGTTG
CTCGGCACCTTGTTCCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGACGTACTGTT
CCGCGGTCTGGCGCTGCTGGCTGCCCAATGGCCGGCCTGGATAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGGGCCTTTCTGTTGTTGCTGCCCGCCGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGTTGCTGTTGATGGTG
TTCCCGCCGAAAAACACGTTGCCGTATGGCGAGGCGGAGGTCTGGCAACTGGATGTCGGGCAGGGCTTGGCGGTGCTGGT
GCGGACTCGCGAGCACGCGATGCTGTATGACGCCGGCCCGCGTTTTGGCGACTCCGACCTGGGCGCCCGGGTGGTGCTGC
CATCGTTGCGCAAGCTGGGCATTGCCCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCACGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGTTGGTCAGCGGCGATCCCGAGGGATTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGAGTACGTTTTTCCCTGTGGCAATGGGCAGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCAGGCGGAA
CGCGCGCTGTTGAATACTCCGCTGGCCGTCGAAACCCACTGGTTACAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATCTCCCGGGGACACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGGAGCAAGGAGCACTGCGGTTGATGCTG
GGCACATACGCCGAACCTACGAGCCTGCGGGCGCAGCGACGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Competence protein (Competence) (198-463)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.534	96.77	0.624