Detailed information
Bioinformatically predicted
Overview
| Name | rocC | Type | Regulator |
| Locus tag | EL176_RS00690 | Genome accession | NZ_LR134332 |
| Coordinates | 155134..155826 (+) | Length | 230 a.a. |
| NCBI ID | WP_010945894.1 | Uniprot ID | Q5ZZ78 |
| Organism | Legionella pneumophila strain NCTC11193 | ||
| Function | rocR chaperone; repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 138604..209545 | 155134..155826 | within | 0 |
Gene organization within MGE regions
Location: 138604..209545
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL176_RS00630 (NCTC11193_00127) | - | 139542..140840 (+) | 1299 | WP_010945883.1 | AAA-associated domain-containing protein | - |
| EL176_RS00635 (NCTC11193_00128) | - | 140917..141531 (-) | 615 | WP_015444948.1 | thiol:disulfide interchange protein DsbA/DsbL | - |
| EL176_RS00640 (NCTC11193_00129) | - | 141542..142144 (-) | 603 | WP_010945885.1 | c-type cytochrome | - |
| EL176_RS00645 (NCTC11193_00130) | yihA | 142219..142821 (+) | 603 | WP_010945886.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| EL176_RS00650 (NCTC11193_00131) | cegC2 | 142935..146243 (+) | 3309 | WP_010945887.1 | Dot/Icm T4SS effector CegC2 | - |
| EL176_RS00655 (NCTC11193_00132) | acs | 146340..148223 (-) | 1884 | WP_010945888.1 | acetate--CoA ligase | - |
| EL176_RS00660 (NCTC11193_00133) | mmsB | 148225..149121 (-) | 897 | WP_015444947.1 | 3-hydroxyisobutyrate dehydrogenase | - |
| EL176_RS00665 (NCTC11193_00134) | - | 149145..150644 (-) | 1500 | WP_015444946.1 | CoA-acylating methylmalonate-semialdehyde dehydrogenase | - |
| EL176_RS00670 (NCTC11193_00135) | - | 150755..150931 (-) | 177 | WP_014840774.1 | dodecin domain-containing protein | - |
| EL176_RS00675 (NCTC11193_00136) | - | 151109..153577 (+) | 2469 | WP_010945891.1 | hypothetical protein | - |
| EL176_RS00680 (NCTC11193_00137) | dapB | 153681..154412 (-) | 732 | WP_010945892.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
| EL176_RS00685 | - | 154592..154777 (-) | 186 | WP_010945893.1 | hypothetical protein | - |
| EL176_RS00690 (NCTC11193_00138) | rocC | 155134..155826 (+) | 693 | WP_010945894.1 | ProQ/FinO family protein | Regulator |
| EL176_RS00695 (NCTC11193_00139) | - | 155827..156897 (+) | 1071 | WP_010945895.1 | hypothetical protein | - |
| EL176_RS00700 (NCTC11193_00140) | sdhB | 156997..162624 (-) | 5628 | WP_010945896.1 | Dot/Icm T4SS effector SdhB | - |
| EL176_RS00705 (NCTC11193_00141) | pyk | 162715..164139 (-) | 1425 | WP_010945897.1 | pyruvate kinase | - |
| EL176_RS00710 (NCTC11193_00142) | - | 164123..165313 (-) | 1191 | WP_010945898.1 | phosphoglycerate kinase | - |
| EL176_RS00715 (NCTC11193_00143) | gap | 165324..166316 (-) | 993 | WP_015444943.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| EL176_RS00720 (NCTC11193_00144) | tkt | 166398..168476 (-) | 2079 | WP_010945900.1 | transketolase | - |
| EL176_RS00725 (NCTC11193_00145) | - | 168662..169996 (+) | 1335 | WP_010945901.1 | hypothetical protein | - |
| EL176_RS00730 (NCTC11193_00146) | - | 170095..172110 (+) | 2016 | WP_015444939.1 | M3 family metallopeptidase | - |
| EL176_RS00740 (NCTC11193_00148) | - | 172917..173237 (+) | 321 | WP_126297580.1 | hypothetical protein | - |
| EL176_RS00745 (NCTC11193_00149) | cas9 | 173713..177831 (+) | 4119 | WP_011212792.1 | type II-B CRISPR-associated RNA-guided endonuclease Cas9/Csx12 | - |
| EL176_RS00750 (NCTC11193_00150) | cas1 | 177828..178820 (+) | 993 | WP_011212793.1 | CRISPR-associated endonuclease Cas1 | - |
| EL176_RS00755 (NCTC11193_00151) | cas2 | 178827..179126 (+) | 300 | WP_011212794.1 | CRISPR-associated endonuclease Cas2 | - |
| EL176_RS00760 (NCTC11193_00152) | cas4 | 179107..179700 (+) | 594 | WP_011212795.1 | CRISPR-associated protein Cas4 | - |
| EL176_RS00765 (NCTC11193_00155) | - | 183315..183752 (+) | 438 | WP_021437110.1 | M48 family metallopeptidase | - |
| EL176_RS00770 (NCTC11193_00156) | - | 183742..184425 (-) | 684 | WP_011212796.1 | LexA family protein | - |
| EL176_RS15685 (NCTC11193_00157) | - | 184578..185447 (+) | 870 | WP_011212797.1 | hypothetical protein | - |
| EL176_RS00775 (NCTC11193_00158) | - | 185413..185775 (+) | 363 | WP_021437111.1 | hypothetical protein | - |
| EL176_RS00780 (NCTC11193_00159) | - | 185788..185991 (+) | 204 | WP_011212799.1 | carbon storage regulator | - |
| EL176_RS00785 (NCTC11193_00160) | - | 185988..186290 (+) | 303 | WP_011212800.1 | TrbC/VirB2 family protein | - |
| EL176_RS00790 (NCTC11193_00161) | - | 186300..186581 (+) | 282 | WP_011212801.1 | type IV secretion system protein VirB3 | - |
| EL176_RS00795 (NCTC11193_00162) | - | 186568..189048 (+) | 2481 | WP_011212802.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| EL176_RS00800 (NCTC11193_00163) | - | 189045..189755 (+) | 711 | WP_011212803.1 | type IV secretion system protein | - |
| EL176_RS00805 (NCTC11193_00164) | lvhB7 | 189770..189916 (+) | 147 | WP_011212804.1 | T4SS-associated protein LvhB7 | - |
| EL176_RS00810 (NCTC11193_00165) | lvrD | 189913..190308 (+) | 396 | WP_011212805.1 | T4SS-associated protein LvrD | - |
| EL176_RS00815 (NCTC11193_00166) | - | 190312..191352 (+) | 1041 | WP_011212806.1 | type IV secretion system protein | - |
| EL176_RS00820 (NCTC11193_00167) | - | 191349..192065 (+) | 717 | WP_011212807.1 | virB8 family protein | - |
| EL176_RS00825 (NCTC11193_00168) | virB9 | 192062..192814 (+) | 753 | WP_011212808.1 | P-type conjugative transfer protein VirB9 | - |
| EL176_RS00830 (NCTC11193_00169) | - | 192811..193902 (+) | 1092 | WP_011212809.1 | TrbI/VirB10 family protein | - |
| EL176_RS00835 (NCTC11193_00170) | virB11 | 193904..194908 (+) | 1005 | WP_011212810.1 | P-type DNA transfer ATPase VirB11 | - |
| EL176_RS00840 (NCTC11193_00171) | - | 194901..196802 (+) | 1902 | WP_011212811.1 | type IV secretory system conjugative DNA transfer family protein | - |
| EL176_RS00845 (NCTC11193_00172) | - | 196900..197697 (+) | 798 | WP_011212812.1 | DUF1566 domain-containing protein | - |
| EL176_RS00850 (NCTC11193_00173) | - | 197931..198692 (+) | 762 | WP_126297581.1 | hypothetical protein | - |
| EL176_RS00855 (NCTC11193_00174) | traA | 198816..201455 (-) | 2640 | WP_011212814.1 | Ti-type conjugative transfer relaxase TraA | - |
| EL176_RS00860 (NCTC11193_00175) | - | 201704..201910 (+) | 207 | WP_011212815.1 | hypothetical protein | - |
| EL176_RS00865 (NCTC11193_00176) | - | 201897..202166 (+) | 270 | WP_011212816.1 | conjugal transfer protein TraD | - |
| EL176_RS00870 (NCTC11193_00177) | - | 202260..202907 (+) | 648 | WP_011212817.1 | hypothetical protein | - |
| EL176_RS00875 (NCTC11193_00178) | comEC | 202911..203720 (+) | 810 | WP_011212818.1 | ComEC/Rec2 family competence protein | Machinery gene |
| EL176_RS00880 (NCTC11193_00179) | - | 203747..204208 (-) | 462 | WP_011212819.1 | nucleoside deaminase | - |
| EL176_RS00885 (NCTC11193_00180) | - | 204201..205628 (-) | 1428 | WP_011212820.1 | VUT family protein | - |
| EL176_RS00890 (NCTC11193_00181) | - | 205621..205980 (-) | 360 | WP_011212821.1 | hypothetical protein | - |
| EL176_RS00895 (NCTC11193_00182) | - | 205997..206644 (-) | 648 | WP_011212822.1 | LexA family transcriptional regulator | - |
| EL176_RS00900 (NCTC11193_00183) | - | 206813..207052 (+) | 240 | WP_011212823.1 | hypothetical protein | - |
| EL176_RS00905 (NCTC11193_00184) | - | 207083..207289 (+) | 207 | WP_011212824.1 | hypothetical protein | - |
| EL176_RS00910 (NCTC11193_00185) | - | 207238..208446 (+) | 1209 | WP_011212825.1 | tyrosine-type recombinase/integrase | - |
| EL176_RS00915 (NCTC11193_00186) | - | 208673..209497 (+) | 825 | WP_011212826.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | - |
Sequence
Protein
Download Length: 230 a.a. Molecular weight: 25741.65 Da Isoelectric Point: 10.7030
>NTDB_id=1121695 EL176_RS00690 WP_010945894.1 155134..155826(+) (rocC) [Legionella pneumophila strain NCTC11193]
MRKQALHPRTAVINKAQKNQSKRARSDALLWLAANFPEAFDNSLRIRPLKIGIMSDILQHAEKAEQVGISKSKLREAVVL
FTRRLDYLACLKAREVRIDLHGNPVAEVTEEEAEHASMKIKKRVEKSVKNARKQVNAKAANHSHVNSQPSAVSSVKPMNS
FDSHPEPLLPIYPLRSSTYASQNVAMQSAKSPSVVVKHKAPKQYDPDAVARLKEKLGLSRKAEEKKETTE
MRKQALHPRTAVINKAQKNQSKRARSDALLWLAANFPEAFDNSLRIRPLKIGIMSDILQHAEKAEQVGISKSKLREAVVL
FTRRLDYLACLKAREVRIDLHGNPVAEVTEEEAEHASMKIKKRVEKSVKNARKQVNAKAANHSHVNSQPSAVSSVKPMNS
FDSHPEPLLPIYPLRSSTYASQNVAMQSAKSPSVVVKHKAPKQYDPDAVARLKEKLGLSRKAEEKKETTE
Nucleotide
Download Length: 693 bp
>NTDB_id=1121695 EL176_RS00690 WP_010945894.1 155134..155826(+) (rocC) [Legionella pneumophila strain NCTC11193]
ATGAGAAAGCAGGCGCTGCACCCACGAACCGCTGTCATCAATAAAGCACAAAAAAATCAATCCAAGCGAGCGCGATCTGA
CGCATTATTATGGCTTGCGGCTAATTTCCCTGAGGCATTCGATAATTCTTTGCGTATTCGGCCATTAAAGATTGGTATTA
TGTCTGATATATTGCAGCATGCAGAAAAAGCAGAGCAAGTTGGAATTTCTAAAAGTAAATTAAGGGAAGCTGTTGTTCTT
TTTACCCGTCGTCTTGATTATCTGGCTTGCCTGAAAGCTCGTGAAGTCCGTATTGATTTGCACGGAAATCCAGTAGCCGA
GGTTACTGAGGAAGAAGCTGAGCATGCTTCCATGAAAATTAAAAAACGCGTGGAAAAGAGTGTTAAAAATGCTCGCAAAC
AAGTGAATGCAAAAGCGGCTAATCATTCGCATGTAAATAGTCAGCCAAGTGCAGTTTCCAGCGTTAAGCCAATGAATTCG
TTTGACTCTCATCCTGAGCCTCTTTTGCCAATATATCCTCTCAGAAGCTCTACCTATGCCTCACAAAATGTGGCAATGCA
ATCCGCCAAGTCACCATCCGTCGTAGTCAAACATAAAGCACCAAAGCAATATGATCCGGATGCTGTAGCCCGTTTAAAAG
AAAAATTAGGATTGTCTCGAAAAGCAGAAGAGAAAAAGGAAACAACAGAGTAA
ATGAGAAAGCAGGCGCTGCACCCACGAACCGCTGTCATCAATAAAGCACAAAAAAATCAATCCAAGCGAGCGCGATCTGA
CGCATTATTATGGCTTGCGGCTAATTTCCCTGAGGCATTCGATAATTCTTTGCGTATTCGGCCATTAAAGATTGGTATTA
TGTCTGATATATTGCAGCATGCAGAAAAAGCAGAGCAAGTTGGAATTTCTAAAAGTAAATTAAGGGAAGCTGTTGTTCTT
TTTACCCGTCGTCTTGATTATCTGGCTTGCCTGAAAGCTCGTGAAGTCCGTATTGATTTGCACGGAAATCCAGTAGCCGA
GGTTACTGAGGAAGAAGCTGAGCATGCTTCCATGAAAATTAAAAAACGCGTGGAAAAGAGTGTTAAAAATGCTCGCAAAC
AAGTGAATGCAAAAGCGGCTAATCATTCGCATGTAAATAGTCAGCCAAGTGCAGTTTCCAGCGTTAAGCCAATGAATTCG
TTTGACTCTCATCCTGAGCCTCTTTTGCCAATATATCCTCTCAGAAGCTCTACCTATGCCTCACAAAATGTGGCAATGCA
ATCCGCCAAGTCACCATCCGTCGTAGTCAAACATAAAGCACCAAAGCAATATGATCCGGATGCTGTAGCCCGTTTAAAAG
AAAAATTAGGATTGTCTCGAAAAGCAGAAGAGAAAAAGGAAACAACAGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rocC | Legionella pneumophila str. Paris |
97.391 |
100 |
0.974 |