Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   EL261_RS09355 Genome accession   NZ_LR134329
Coordinates   1981515..1982714 (+) Length   399 a.a.
NCBI ID   WP_041937118.1    Uniprot ID   -
Organism   Bordetella parapertussis strain NCTC10524     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1976515..1987714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL261_RS09330 (NCTC10524_01889) - 1978375..1978761 (+) 387 WP_010927711.1 MOSC N-terminal beta barrel domain-containing protein -
  EL261_RS09335 (NCTC10524_01890) - 1978769..1979986 (-) 1218 WP_003808568.1 benzoate/H(+) symporter BenE family transporter -
  EL261_RS09340 (NCTC10524_01891) - 1979983..1980234 (-) 252 WP_003808570.1 YfhL family 4Fe-4S dicluster ferredoxin -
  EL261_RS09345 (NCTC10524_01892) coaD 1980289..1980798 (-) 510 WP_003808574.1 pantetheine-phosphate adenylyltransferase -
  EL261_RS09350 (NCTC10524_01893) rsmD 1980819..1981439 (-) 621 WP_003808577.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  EL261_RS09355 (NCTC10524_01894) pilA 1981515..1982714 (+) 1200 WP_041937118.1 signal recognition particle-docking protein FtsY Machinery gene
  EL261_RS09360 - 1982761..1984359 (-) 1599 WP_010927713.1 CYTH and CHAD domain-containing protein -
  EL261_RS09365 (NCTC10524_01896) phnE 1984598..1985419 (-) 822 WP_003808584.1 phosphonate ABC transporter, permease protein PhnE -
  EL261_RS09370 (NCTC10524_01897) phnE 1985416..1986285 (-) 870 WP_169507383.1 phosphonate ABC transporter, permease protein PhnE -
  EL261_RS09375 (NCTC10524_01898) phnC 1986303..1987073 (-) 771 WP_010927715.1 phosphonate ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 399 a.a.        Molecular weight: 41695.66 Da        Isoelectric Point: 5.2904

>NTDB_id=1121621 EL261_RS09355 WP_041937118.1 1981515..1982714(+) (pilA) [Bordetella parapertussis strain NCTC10524]
MFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPAPMPAPQPEPQPEPQPQQPPEPAPPAMASPPVAESQPP
VAEPQPPVAAAPEAPRKASWLSRLKQGLSRTGQNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKE
RIDDPAQVKTALRQLLADHLWPLERSFDLGRAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQ
LVEWGSRNNVTVISQDGGDPAAVAFDSVNAGRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVD
GNTGQNALAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide


Download         Length: 1200 bp        

>NTDB_id=1121621 EL261_RS09355 WP_041937118.1 1981515..1982714(+) (pilA) [Bordetella parapertussis strain NCTC10524]
ATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGTGGACGC
AGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAACCGGCCCCGATGCCGGCCCCCCAGCCCGAGCCGCAGC
CCGAGCCGCAGCCGCAACAACCGCCCGAGCCGGCGCCGCCGGCCATGGCGTCGCCGCCTGTCGCCGAGTCGCAGCCACCG
GTCGCCGAGCCGCAGCCACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTGGCTGAGCCGGCTCAAACAGGG
CCTGTCGCGCACCGGCCAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTGGAGT
CGGCGCTGATCATGGCCGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGCCGCGCTGCGCGCGCGCGTCAAGAAAGAG
CGCATCGACGATCCGGCGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCGACCATCTGTGGCCGCTGGAGCGGTCCTT
CGACCTGGGGCGGGCCCAGCCCCTGGTGGTCATGATCGCCGGCGTCAACGGCGCGGGCAAGACGACCTCGATCGGCAAGC
TGGCGCATACCTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGACACCTTCCGCGCGGCGGCGCGCGAGCAA
TTGGTCGAATGGGGCAGCCGCAACAATGTGACCGTGATCTCGCAGGATGGCGGCGATCCGGCCGCGGTGGCGTTCGACTC
GGTCAATGCCGGACGTGCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGA
TGGAAGAATTGAAGAAGATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGCGCCGCATGAAGTGCTGCTGGTGGTCGAT
GGCAACACCGGCCAGAACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCATCACCCTCACCGGCCTGGTCGTCACCAA
GCTGGACGGCACCGCCAAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCGTGCGGCCCATCCCGGTCTATT
GGATCGGCGTGGGCGAGGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(195-397)

SRP54-type protein, helical bundle domain (SRP54_N)

(115-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.7

100

0.516

Multiple sequence alignment