Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   EL144_RS10320 Genome accession   NZ_LR134327
Coordinates   2159652..2160173 (-) Length   173 a.a.
NCBI ID   WP_005701128.1    Uniprot ID   A0A3S4RIZ1
Organism   Aggregatibacter aphrophilus ATCC 33389 strain NCTC 5906     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2154652..2165173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL144_RS10305 (NCTC5906_02071) comQ 2157953..2158255 (-) 303 WP_032995153.1 DUF5374 domain-containing protein Machinery gene
  EL144_RS10310 (NCTC5906_02072) - 2158239..2158925 (-) 687 WP_005703801.1 DUF2572 family protein -
  EL144_RS10315 (NCTC5906_02073) - 2158922..2159665 (-) 744 WP_032995151.1 type II secretion system protein J -
  EL144_RS10320 (NCTC5906_02074) comN 2159652..2160173 (-) 522 WP_005701128.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  EL144_RS10335 (NCTC5906_02077) pal 2160820..2161284 (-) 465 WP_005703799.1 peptidoglycan-associated lipoprotein Pal -
  EL144_RS10340 (NCTC5906_02078) tolB 2161299..2162579 (-) 1281 WP_050332782.1 Tol-Pal system beta propeller repeat protein TolB -
  EL144_RS10345 (NCTC5906_02079) tolA 2162615..2163865 (-) 1251 WP_050332778.1 cell envelope integrity protein TolA -
  EL144_RS10350 (NCTC5906_02080) tolR 2163884..2164306 (-) 423 WP_032995149.1 colicin uptake protein TolR -
  EL144_RS10355 (NCTC5906_02081) tolQ 2164430..2165119 (-) 690 WP_005701134.1 protein TolQ -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20245.35 Da        Isoelectric Point: 8.2465

>NTDB_id=1121610 EL144_RS10320 WP_005701128.1 2159652..2160173(-) (comN) [Aggregatibacter aphrophilus ATCC 33389 strain NCTC 5906]
MQKGFTLLEILIALLIISVLLTLSLPAWQQHRQQNILQKEQQKLYIFLRQIQARVENSSDIWFLIANRHQMTQRWCLTAQ
IKSDKLCDCLNPQHCPQEVSAHFYYPTFEDTILISKRYYPFEFTRLSGIRNTASTACFVLQANHQRTLFSFFNVGSLKLK
DNQSLSACVNDEE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1121610 EL144_RS10320 WP_005701128.1 2159652..2160173(-) (comN) [Aggregatibacter aphrophilus ATCC 33389 strain NCTC 5906]
ATGCAAAAGGGATTTACCCTGTTAGAAATCTTAATCGCCCTGCTGATAATAAGTGTATTGCTCACATTGTCGCTTCCCGC
ATGGCAGCAGCATCGTCAGCAAAATATTTTGCAGAAAGAACAACAAAAGCTGTATATCTTTTTGCGTCAAATTCAGGCTA
GAGTGGAAAATTCATCCGACATTTGGTTTTTAATTGCGAATCGCCATCAAATGACGCAACGTTGGTGCCTCACTGCTCAA
ATTAAGAGTGACAAATTATGTGATTGCCTCAACCCGCAGCATTGCCCGCAAGAGGTTTCCGCACATTTTTACTATCCTAC
ATTTGAAGACACCATATTAATCAGCAAGCGTTACTATCCTTTTGAATTTACCCGTTTGAGTGGTATTCGGAACACGGCGT
CAACAGCCTGTTTTGTGTTACAAGCGAATCATCAACGAACCCTATTTTCATTTTTTAATGTGGGTAGTTTGAAGTTAAAA
GATAACCAATCCTTAAGCGCCTGTGTTAATGATGAAGAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S4RIZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

59.172

97.688

0.578

Multiple sequence alignment