Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   EL144_RS08650 Genome accession   NZ_LR134327
Coordinates   1801815..1804244 (+) Length   809 a.a.
NCBI ID   WP_005704172.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus ATCC 33389 strain NCTC 5906     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1796815..1809244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL144_RS08630 (NCTC5906_01736) - 1797197..1798555 (+) 1359 WP_005700660.1 MFS transporter -
  EL144_RS08635 (NCTC5906_01737) folK 1799013..1799519 (-) 507 WP_005704177.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  EL144_RS08640 (NCTC5906_01738) pcnB 1799512..1800810 (-) 1299 WP_407923678.1 polynucleotide adenylyltransferase PcnB -
  EL144_RS08645 (NCTC5906_01739) dksA 1801084..1801521 (-) 438 WP_005556693.1 RNA polymerase-binding protein DksA -
  EL144_RS08650 (NCTC5906_01740) rec2 1801815..1804244 (+) 2430 WP_005704172.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EL144_RS08655 (NCTC5906_01741) msbA 1804289..1806037 (+) 1749 WP_005704171.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  EL144_RS08660 (NCTC5906_01742) lpxK 1806056..1807033 (+) 978 WP_005704170.1 tetraacyldisaccharide 4'-kinase -
  EL144_RS08665 (NCTC5906_01743) - 1807132..1807311 (+) 180 WP_032995260.1 Trm112 family protein -
  EL144_RS08670 (NCTC5906_01744) kdsB 1807313..1808086 (+) 774 WP_005704168.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 809 a.a.        Molecular weight: 91893.69 Da        Isoelectric Point: 9.7380

>NTDB_id=1121608 EL144_RS08650 WP_005704172.1 1801815..1804244(+) (rec2) [Aggregatibacter aphrophilus ATCC 33389 strain NCTC 5906]
MNISLDKFAGTLIFSGLTLLFLPDKWLLSWQVALYIFLPLLFITLLCYCLKLTKLLTLLTYLLLFLAQLVYVHFPALSLL
KQADNIANLPKILHTEFTVQEVLNQQEFQTVVIAAKLAEDLPEQRIYAQWKVPQIVQIGEHYEGDLRLRPISSRLNFNGF
DRQQWYFGKHISAWASVQSAVKIKNVFSWRQTALNNALKQTENLSQQGLLLALGFGERAWLDNETWQIYQKTNTAHLIAI
SGLHIGLAMLLGYGLARLLQFFLPTRYLTPTLPILCGLLFALLYSQLAGMAIPTLRAMVALAILYAIQGLRLYWTPWRLL
WRVLALLILIDPLMLLSTSFWLSVSAVTSLMIWYQFFPLSLLQWRQSSLTHSPWHKVRWIFSLFHLQLGLLWLFTPIQLF
FFNGLSLNGFIANLIAMPIYSFLLVPLVLFAVFTQGALYSWQAANNLSEKITALLAYGQDGWLTVSLQQSLWLTLLLTIA
FLSALHFVYKTPKPIASPIELAKQSRNKGFHLNPARKLDLGLPIKAYAIGGGLVVFCITSLIYQSISRPHWQLETLDVGQ
GLATLIVKNGKGVLYDTGPSWNGGSMARLEILPYLQREGIELDWLIISHDDNDHAGGAKDILAAYPTVKFISPSDKIYGE
KNDRKIDRTLCQTGEKWHWQGLSFSVLSPDNIVPRAENKDSCTLLLSDGQHQILLTGDADLGVEYKILPKLGKIDVLQVG
HHGSKTSTGEALVRQTEPKIALISSGRWNPWHFPHKDVVARLRRQNTQIYNTAEHGQIRLLFQDKEIKIQTARTEFSPWY
RRLIGLQTK

Nucleotide


Download         Length: 2430 bp        

>NTDB_id=1121608 EL144_RS08650 WP_005704172.1 1801815..1804244(+) (rec2) [Aggregatibacter aphrophilus ATCC 33389 strain NCTC 5906]
GTGAATATTTCGTTAGATAAATTTGCCGGCACACTGATTTTCAGTGGGCTAACACTATTATTTTTGCCCGATAAATGGCT
TTTATCGTGGCAGGTTGCATTGTATATTTTCCTCCCGTTACTATTTATAACGTTACTTTGTTACTGCTTAAAATTAACCA
AGTTATTAACGCTACTCACCTATTTATTGCTGTTTCTTGCCCAGCTGGTTTATGTGCATTTCCCTGCCCTGTCACTGCTC
AAACAAGCGGACAACATTGCCAATTTGCCGAAAATCCTTCACACCGAATTCACCGTACAAGAAGTGTTGAACCAACAAGA
GTTTCAAACTGTAGTCATTGCCGCCAAACTCGCCGAAGACTTACCGGAACAACGTATTTATGCTCAATGGAAAGTGCCGC
AAATCGTGCAAATCGGCGAACATTATGAGGGCGATTTACGTCTGCGTCCAATATCGTCCCGTTTAAACTTTAACGGCTTC
GACCGCCAACAATGGTATTTCGGCAAACACATTAGCGCATGGGCAAGCGTGCAAAGTGCGGTCAAAATAAAAAACGTTTT
TTCCTGGCGACAAACGGCTCTCAATAACGCCCTAAAACAAACAGAAAATCTATCCCAACAAGGTCTACTATTAGCCCTTG
GTTTTGGCGAACGTGCATGGTTAGACAACGAAACTTGGCAAATTTATCAAAAAACTAATACGGCACATTTAATCGCCATT
TCCGGCTTGCATATCGGCCTTGCCATGTTGCTAGGATATGGCCTGGCACGCCTATTGCAATTTTTTCTGCCAACCCGCTA
TCTCACGCCGACATTGCCGATACTATGCGGTTTGCTATTTGCCTTGCTTTATAGTCAGTTGGCGGGCATGGCAATTCCCA
CCCTGCGCGCCATGGTTGCCCTCGCTATTCTCTATGCCATTCAAGGCCTAAGGCTATACTGGACGCCTTGGCGTTTATTG
TGGCGGGTGTTGGCATTATTGATTTTGATCGATCCGCTTATGTTGCTTTCTACCAGTTTCTGGCTGTCCGTCAGCGCCGT
CACAAGTTTGATGATTTGGTATCAATTCTTTCCACTATCGCTATTACAATGGCGCCAATCATCCCTTACCCATTCACCAT
GGCACAAAGTGCGGTGGATTTTTTCGCTGTTTCATCTGCAATTGGGGCTGTTATGGTTGTTTACCCCAATTCAACTTTTC
TTTTTTAACGGACTCTCTTTAAATGGCTTTATAGCCAATTTAATCGCCATGCCCATATACAGCTTTTTGTTGGTTCCCTT
AGTGTTGTTTGCCGTATTCACCCAAGGCGCCTTGTATTCATGGCAGGCCGCCAATAATTTATCGGAAAAAATCACCGCAC
TTTTGGCTTATGGGCAAGACGGATGGCTCACGGTTTCACTTCAACAAAGTTTATGGCTAACGCTTTTGCTCACGATTGCG
TTTTTAAGCGCATTACATTTTGTTTATAAAACCCCGAAACCTATCGCATCCCCCATCGAATTAGCCAAACAATCCCGTAA
TAAAGGATTTCATTTGAACCCCGCGCGTAAACTTGATTTAGGGTTACCAATCAAGGCGTATGCCATCGGCGGCGGATTAG
TGGTGTTTTGCATTACTTCATTGATTTACCAGTCAATTTCACGCCCTCATTGGCAATTAGAAACCTTAGATGTAGGGCAA
GGGCTCGCCACGTTAATCGTTAAAAATGGCAAAGGCGTGCTCTATGATACCGGCCCAAGTTGGAACGGCGGCAGCATGGC
AAGATTAGAAATTTTGCCTTATTTACAACGGGAAGGTATTGAACTTGATTGGTTGATCATAAGCCATGATGACAACGATC
ACGCCGGCGGAGCAAAAGATATTTTAGCGGCATACCCGACTGTGAAATTCATTAGCCCGTCAGACAAAATCTATGGGGAA
AAAAACGATCGCAAAATCGACCGCACTTTGTGCCAAACCGGTGAGAAATGGCATTGGCAGGGGTTAAGTTTCTCCGTACT
CTCTCCCGATAATATCGTGCCAAGGGCGGAAAATAAGGATTCTTGCACACTATTACTAAGTGATGGACAACATCAAATTT
TACTCACAGGCGATGCGGATCTTGGGGTGGAATATAAGATCTTGCCAAAACTTGGAAAAATTGATGTATTGCAAGTGGGA
CACCATGGCAGTAAAACCTCCACCGGTGAAGCGTTGGTGCGACAAACGGAACCTAAGATCGCGCTGATTTCCAGCGGACG
TTGGAATCCTTGGCATTTTCCCCACAAAGACGTAGTTGCTCGTTTAAGACGACAAAATACACAAATTTATAACACGGCGG
AACACGGACAAATCCGTTTATTGTTTCAGGATAAGGAGATAAAAATTCAAACTGCGCGGACAGAATTTTCGCCGTGGTAT
CGCAGATTAATTGGCTTACAGACGAAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(30-180)

Competence protein (Competence)

(213-485)

Metallo-beta-lactamase superfamily (Lactamase_B)

(557-746)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

53.59

96.415

0.517

Multiple sequence alignment