Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   VV93_RS13915 Genome accession   NZ_CP009261
Coordinates   3027238..3029442 (+) Length   734 a.a.
NCBI ID   WP_039554854.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 93U204     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3022238..3034442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV93_RS13895 (VV93_v1c27360) - 3023400..3024566 (-) 1167 WP_039554852.1 O-succinylhomoserine (thiol)-lyase -
  VV93_RS13900 (VV93_v1c27370) metJ 3024778..3025095 (+) 318 WP_011079338.1 met regulon transcriptional regulator MetJ -
  VV93_RS13905 (VV93_v1c27380) - 3025182..3026459 (-) 1278 WP_011079337.1 malic enzyme-like NAD(P)-binding protein -
  VV93_RS13910 (VV93_v1c27390) rpmE 3026736..3026957 (-) 222 WP_011151292.1 50S ribosomal protein L31 -
  VV93_RS13915 (VV93_v1c27400) priA 3027238..3029442 (+) 2205 WP_039554854.1 primosomal protein N' Machinery gene
  VV93_RS13920 (VV93_v1c27410) cytR 3029671..3030678 (+) 1008 WP_011079334.1 DNA-binding transcriptional regulator CytR Regulator
  VV93_RS13925 (VV93_v1c27420) - 3030788..3031345 (+) 558 WP_011151294.1 SPOR domain-containing protein -
  VV93_RS13930 (VV93_v1c27430) hslV 3031497..3032051 (+) 555 WP_017419639.1 ATP-dependent protease subunit HslV -
  VV93_RS13935 (VV93_v1c27440) hslU 3032079..3033410 (+) 1332 WP_039554856.1 HslU--HslV peptidase ATPase subunit -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 81964.52 Da        Isoelectric Point: 8.4702

>NTDB_id=112160 VV93_RS13915 WP_039554854.1 3027238..3029442(+) (priA) [Vibrio vulnificus strain 93U204]
MRPSIARVALPVPLDKQFDYLVPGHLFPIIGGRVSVPFGRQTLIGIVTALVQESDFPREQLKPIKAVLDHRPIWPDSVYS
LLLWCSHFYQYPLGETLHNALPAALRKGKAADFATLQEWQLTELGKNQLMQGLNSRAIKQAKVLNMLANGPLPHQTFLDE
EVASTTLRTLEEKGWISCEEKTPQLARWGNPIEHPVDKPKLNQEQAIAIATVNSQTDFGCYLLEGVTGSGKTEVYLNLIK
PILEQGKQALVLVPEIGLTPQTINRFRQRFDVPVAVIHSGLNDTERLNAWLSARDKAAGIVIGTRSALLIPFAQLGIIIV
DEEHDASYKQQDSLRYHARDVAVMRAAKEGIPIVLGSATPALETLHNALTGKYHHLSLTQRAGVAVPTTNKVLDVKGLYL
ESGLSAPLIAEMRHHLKAGNQVMLFLNRRGFSPALMCHECGWIAECKRCDAYYTYHQYSNEIRCHHCGSQQPIIHQCQGC
GSTQLVTVGVGTEQLENQLTALFPDYKAIRIDRDSTRRKGSLESALEAIRKGEYQILIGTQMLAKGHHFPDVTLVALLDV
DGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVILQTHHPEHTLLKALLTKDYRHFAQSALEERKIAQLPPFSFLTLF
RAEANHSEIVETFLRQVRMTLESHPLFDHTCLVLGPTPAPLAKRAGKYRWQLLLQTQHRSLMQKILSSTKPAIDLLPDAK
KVRWNLDIEPQDLS

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=112160 VV93_RS13915 WP_039554854.1 3027238..3029442(+) (priA) [Vibrio vulnificus strain 93U204]
ATGCGTCCATCCATTGCTCGTGTTGCGCTGCCAGTGCCACTCGATAAACAATTTGATTATCTCGTTCCTGGACACCTTTT
TCCGATCATTGGTGGTCGCGTGAGTGTGCCATTTGGACGACAAACCTTGATTGGTATTGTCACCGCTTTGGTTCAAGAAT
CAGACTTTCCACGCGAGCAACTTAAACCCATTAAAGCGGTGTTGGATCATCGTCCTATTTGGCCCGATTCCGTCTACAGT
TTATTACTTTGGTGTAGCCACTTTTACCAATATCCCTTAGGTGAAACACTGCATAACGCCCTCCCCGCAGCACTAAGAAA
AGGCAAAGCGGCTGACTTTGCCACTCTACAAGAATGGCAACTGACCGAGTTAGGCAAAAACCAGTTGATGCAAGGGTTAA
ACAGTCGTGCGATAAAGCAAGCGAAAGTATTGAATATGCTTGCTAATGGCCCTCTGCCTCACCAAACCTTTTTGGATGAG
GAAGTGGCATCCACAACCTTACGCACCTTGGAAGAAAAAGGCTGGATCAGCTGTGAAGAAAAAACGCCACAGTTGGCTCG
TTGGGGGAATCCGATTGAACATCCCGTCGATAAGCCGAAACTCAACCAAGAGCAAGCCATTGCCATTGCGACCGTTAACA
GCCAGACAGACTTTGGCTGTTATCTGTTGGAAGGGGTCACAGGTTCAGGCAAAACCGAAGTTTATCTCAACTTGATCAAA
CCCATTTTGGAACAAGGCAAACAGGCTCTGGTGTTGGTCCCTGAAATTGGTTTAACACCACAAACCATCAATCGTTTTCG
TCAACGGTTTGATGTGCCAGTCGCCGTCATCCATTCTGGTCTTAATGATACTGAACGTCTCAACGCTTGGCTTTCCGCAC
GAGATAAAGCGGCGGGCATTGTCATTGGTACACGCTCTGCACTACTGATCCCATTTGCTCAATTGGGGATCATCATTGTC
GATGAAGAGCACGACGCTTCGTACAAACAGCAAGATAGCTTGCGTTACCATGCTCGCGATGTGGCTGTGATGCGAGCGGC
AAAAGAAGGCATTCCAATTGTTCTCGGTTCAGCCACGCCCGCGTTAGAAACCTTACACAACGCACTTACGGGCAAATATC
ATCATCTCTCGCTAACCCAACGAGCAGGAGTGGCCGTGCCAACCACCAACAAAGTGCTGGATGTCAAAGGGCTCTATCTG
GAAAGCGGCCTCTCAGCGCCACTCATTGCTGAAATGCGTCATCATTTAAAAGCGGGCAATCAGGTGATGCTGTTTCTCAA
CCGTCGAGGCTTCTCCCCTGCGTTAATGTGTCATGAATGTGGTTGGATTGCCGAATGCAAACGCTGCGATGCCTATTACA
CTTATCACCAGTACAGCAATGAAATCCGCTGTCACCACTGTGGTTCTCAACAACCTATTATCCATCAATGCCAAGGTTGT
GGTTCGACACAACTGGTGACGGTTGGTGTCGGCACTGAGCAACTGGAAAACCAGTTGACGGCCCTGTTTCCCGATTACAA
AGCGATTCGCATCGACCGCGATAGTACACGACGCAAAGGCAGTCTCGAAAGCGCTTTAGAAGCCATTCGCAAAGGGGAAT
ACCAAATTTTAATTGGCACGCAAATGCTGGCTAAAGGCCATCACTTCCCAGACGTGACATTAGTGGCACTATTAGATGTC
GATGGTTCTCTTTACAGCAGCGATTTTCGCGCCTCTGAACGATTAGCTCAGTTGTTTATTCAAGTGGCCGGACGAGCAGG
GCGTGCTAGCAAACCTGGCGAAGTGATATTACAAACCCACCATCCAGAACACACCTTGCTCAAAGCTCTGTTGACCAAGG
ATTACCGGCATTTTGCGCAGTCTGCACTGGAAGAACGGAAAATTGCCCAACTTCCCCCGTTTAGTTTTCTAACGCTATTT
CGCGCAGAAGCCAATCACAGCGAAATCGTCGAAACATTCTTACGTCAAGTGCGTATGACTCTCGAGTCTCATCCCTTGTT
TGATCACACTTGTCTCGTGCTCGGTCCAACCCCCGCTCCACTGGCCAAACGTGCGGGCAAATACCGCTGGCAGCTTCTGC
TTCAAACTCAACATCGTTCCTTGATGCAGAAAATACTCTCGAGCACGAAACCTGCTATCGATTTGTTACCAGATGCGAAA
AAAGTACGTTGGAATTTGGATATTGAGCCACAGGATCTGAGTTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(514-589)

DEAD/DEAH box helicase (DEAD)

(205-364)

3DNA-binding domain (3BD) (PriA_3primeBD)

(7-102)

Primosomal protein N C-terminal domain (PriA_C)

(633-730)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(446-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

43.342

100

0.435

Multiple sequence alignment