Detailed information NTG1121587

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: EL288_RS19510
• Genome accession: NZ_LR134326
• Coordinates: 4160475..4161542 (-)
• Length: 355 a.a.
• NCBI ID: WP_010925998.1
• Uniprot ID: -
• Organism: Bordetella bronchiseptica strain NCTC10543
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4155475..4166542

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL288_RS19490 (NCTC10543_03899)	phnC	4156167..4156937 (+)	771	WP_003808589.1	phosphonate ABC transporter ATP-binding protein	-
EL288_RS19495 (NCTC10543_03900)	phnE	4156955..4157824 (+)	870	WP_172452875.1	phosphonate ABC transporter, permease protein PhnE	-
EL288_RS19500 (NCTC10543_03901)	phnE	4157821..4158642 (+)	822	WP_003808584.1	phosphonate ABC transporter, permease protein PhnE	-
EL288_RS19505	-	4158830..4160428 (+)	1599	WP_033453969.1	CYTH and CHAD domain-containing protein	-
EL288_RS19510 (NCTC10543_03903)	pilA	4160475..4161542 (-)	1068	WP_010925998.1	signal recognition particle-docking protein FtsY	Machinery gene
EL288_RS19515 (NCTC10543_03904)	rsmD	4161750..4162370 (+)	621	WP_003808577.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
EL288_RS19520 (NCTC10543_03905)	coaD	4162391..4162900 (+)	510	WP_003808574.1	pantetheine-phosphate adenylyltransferase	-
EL288_RS19525 (NCTC10543_03906)	-	4162955..4163206 (+)	252	WP_003808570.1	YfhL family 4Fe-4S dicluster ferredoxin	-
EL288_RS19530 (NCTC10543_03907)	-	4163203..4164420 (+)	1218	WP_033459313.1	benzoate/H(+) symporter BenE family transporter	-
EL288_RS19535 (NCTC10543_03908)	-	4164428..4164814 (-)	387	WP_003808567.1	MOSC N-terminal beta barrel domain-containing protein	-

Sequence

Protein

• Length: 355 a.a.
• Molecular weight: 37273.67 Da
• Isoelectric Point: 5.4828

>NTDB_id=1121587 EL288_RS19510 WP_010925998.1 4160475..4161542(-) (pilA) [Bordetella bronchiseptica strain NCTC10543]
MPAPQPEPQPEPQPQQPPEPAPPAMASPPVAEPQPPVAEPQPPVAAAPEAPRKASWLSRLKQGLSRTGQNIGGLFVGVKV
DENLFEELESALIMADAGIEATEKLLAALRARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRAQPLVVMIAGVNG
AGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVISQDGGDPAAVAFDSVNAGRARNVGVVMVDTA
GRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGS
QGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide

• Length: 1068 bp

>NTDB_id=1121587 EL288_RS19510 WP_010925998.1 4160475..4161542(-) (pilA) [Bordetella bronchiseptica strain NCTC10543]
ATGCCGGCCCCCCAGCCCGAGCCGCAGCCCGAGCCGCAGCCGCAACAACCGCCCGAGCCGGCGCCGCCGGCCATGGCGTC
GCCGCCTGTCGCCGAGCCGCAGCCACCGGTCGCCGAGCCGCAGCCACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGG
CCTCGTGGCTGAGCCGGCTCAAACAGGGCCTGTCGCGCACCGGCCAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTC
GACGAGAACCTGTTCGAGGAACTGGAGTCGGCGCTGATCATGGCCGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGC
CGCGCTGCGCGCGCGCGTCAAGAAAGAGCGCATCGACGATCCGGCGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCG
ACCATCTGCGGCCGCTGGAGCGGTCCTTCGACCTGGGGCGGGCCCAGCCCCTGGTGGTCATGATCGCCGGCGTCAACGGC
GCGGGCAAGACGACCTCGATCGGCAAGCTGGCGCATACCTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGA
CACCTTCCGCGCGGCGGCGCGCGAGCAATTGGTCGAATGGGGCAGCCGCAACAATGTGACCGTGATCTCGCAGGATGGCG
GCGATCCGGCCGCGGTGGCGTTCGACTCGGTCAATGCCGGACGTGCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCC
GGCCGCCTGCCCACGCAGCTGCACCTGATGGAAGAATTGAAGAAGATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGC
GCCGCATGAAGTGCTGCTGGTGGTCGATGGCAACACCGGCCAGAACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCA
TCACCCTCACCGGCCTGGTCGTCACCAAGCTGGACGGCACCGCCAAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGC
CAGGGCGTGCGGCCCATCCCGGTCTATTGGATCGGCGTGGGCGAGGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGA
GTTCGCCGCCGCCCTGCTGGCTGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (71-130)

• SRP54-type protein, GTPase domain (SRP54) (151-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.623	97.183	0.521