Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EL134_RS08710 Genome accession   NZ_LR134325
Coordinates   1763784..1765595 (+) Length   603 a.a.
NCBI ID   WP_048686197.1    Uniprot ID   -
Organism   Lactobacillus paragasseri strain NCTC13720     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1758784..1770595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL134_RS08685 (NCTC13720_01772) - 1759146..1759928 (-) 783 WP_039157653.1 threonine/serine exporter family protein -
  EL134_RS08690 (NCTC13720_01773) - 1759951..1761498 (-) 1548 WP_048686201.1 ABC-F family ATP-binding cassette domain-containing protein -
  EL134_RS08695 (NCTC13720_01774) - 1761507..1761899 (-) 393 WP_003649972.1 hypothetical protein -
  EL134_RS08700 (NCTC13720_01775) - 1762122..1762391 (+) 270 WP_020807069.1 hypothetical protein -
  EL134_RS08705 (NCTC13720_01776) - 1762496..1763620 (-) 1125 WP_048686198.1 LCP family protein -
  EL134_RS08710 (NCTC13720_01777) pepF 1763784..1765595 (+) 1812 WP_048686197.1 oligoendopeptidase F Regulator
  EL134_RS08715 (NCTC13720_01778) - 1765654..1766526 (-) 873 WP_126327936.1 Rpn family recombination-promoting nuclease/putative transposase -
  EL134_RS08720 (NCTC13720_01779) - 1766671..1768182 (-) 1512 WP_048685572.1 L-lactate permease -
  EL134_RS08725 (NCTC13720_01780) - 1768302..1769093 (-) 792 WP_003649965.1 metal ABC transporter permease -
  EL134_RS08730 (NCTC13720_01781) - 1769093..1769752 (-) 660 WP_003649964.1 metal ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69004.90 Da        Isoelectric Point: 4.6562

>NTDB_id=1121573 EL134_RS08710 WP_048686197.1 1763784..1765595(+) (pepF) [Lactobacillus paragasseri strain NCTC13720]
MALPTRNEVSDDLKWDLSRVFKNDQEWEQEYKQVAQEIKNLSKFKGTLAKSGKDLYEGITAILAVNRRLEKVYVYATMSS
DVDTSNNHYLGFVAKAQSLANQMSAAIAFVDPEILSIPEETLAKFMQDEPRLENYRHRLEQITQKRPHTLPANEEKIIAD
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRNVRKNAFDVMYASYGQFENSLASTLSGEVKA
HNFNARVHKYNSAREAALSENSVPTAVYDTLIKEVNSHLDLLHRYVALRKKILGLKDLQMYDMYVPLTGKPVLSYNFEEA
KEEARKALAPLGEDYLKHVDYIFNNRVIDVVENQNKVTGAYSGGAYDTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHETDANGQPLTA
DVLDEFYGNLNQRYYGDSVEPGGEIAMEWSRIPHFYYNFYVYQYATGFAAATALANKVVHGTEQERDAYINFLKSGSSDY
PTEIMKRAGVDMTRADYLRDAFDTLEKRLNEFEKIVNELNAEK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=1121573 EL134_RS08710 WP_048686197.1 1763784..1765595(+) (pepF) [Lactobacillus paragasseri strain NCTC13720]
ATGGCTCTTCCAACAAGAAATGAAGTATCCGATGATCTTAAGTGGGACTTAAGTCGTGTTTTTAAGAACGATCAAGAATG
GGAACAAGAATATAAGCAGGTTGCACAAGAAATCAAGAACTTAAGTAAATTTAAGGGAACACTTGCCAAATCTGGTAAAG
ATCTTTACGAAGGAATTACAGCAATTTTAGCTGTAAATCGACGCTTAGAAAAAGTATATGTTTACGCTACAATGTCAAGC
GATGTAGACACAAGCAATAATCATTACCTCGGTTTTGTTGCTAAAGCACAAAGCTTAGCTAATCAAATGAGTGCTGCAAT
TGCTTTTGTCGATCCTGAAATATTATCTATTCCAGAAGAAACCCTTGCTAAGTTTATGCAAGATGAACCACGTTTAGAAA
ATTATCGACACCGCCTTGAACAGATTACGCAAAAACGTCCTCATACCTTGCCAGCAAATGAAGAAAAAATCATTGCTGAC
GCTGGAGATGCAATGGGTACATCTGCTAATACCTTCAACGTCTTAACTAATTCTGATATGGAATATGGCTACGTCCAAGA
TGAAGACGGTGAAATGGTTCAATTATCTGACGGGCTATATTCACTTTTAATCCAATCTCAAGACCGCAACGTCCGTAAAA
ACGCCTTTGACGTGATGTATGCAAGCTACGGACAGTTTGAAAACAGTCTTGCTTCAACTTTATCAGGCGAAGTAAAAGCT
CACAATTTTAATGCTCGCGTACATAAATACAATTCGGCTAGAGAAGCTGCTTTAAGTGAAAATAGTGTACCAACAGCTGT
TTACGATACATTGATCAAGGAAGTAAATAGCCACCTTGACTTACTTCACCGCTACGTTGCATTAAGAAAGAAAATTCTAG
GCTTAAAAGACCTTCAAATGTACGATATGTACGTCCCATTAACCGGGAAGCCAGTTCTTTCTTATAACTTTGAGGAAGCA
AAAGAAGAAGCAAGAAAGGCTCTAGCACCATTAGGAGAAGACTATTTAAAACACGTTGATTATATTTTTAATAACCGCGT
AATTGATGTGGTTGAAAATCAAAACAAGGTTACTGGTGCATATTCAGGTGGTGCTTACGATACTGATCCATATGAACTAC
TTAACTGGGAAGATAACCTTGATTCACTCTACACTCTAGTCCATGAAACTGGTCACTCTGTCCACTCTTGGTACACAAGA
AACACTCAACCTTATGTCTATGGTGATTATCCAATTTTCGTTGCTGAAATTGCTTCAACTACTAATGAGAATATTTTAAC
CGAGTATTTCTTAGATAAAATTACTGATCCAAAGACCCGTGCATTTGTCTTAAACCATTATCTGGATTCGTTTAAAGGCA
CACTCTTCCGTCAAACTCAATTTGCGGAATTTGAACAATTTATTCATGAAACTGATGCTAATGGTCAGCCGCTAACAGCT
GACGTACTCGATGAATTTTATGGCAACTTAAACCAAAGATACTATGGAGATAGCGTAGAACCTGGTGGAGAAATTGCTAT
GGAATGGTCACGTATTCCTCACTTCTACTACAACTTCTATGTTTACCAATACGCAACAGGTTTTGCGGCTGCAACTGCAC
TTGCTAATAAAGTTGTTCACGGTACTGAGCAAGAACGTGATGCTTATATTAATTTCTTAAAATCAGGATCTTCAGATTAT
CCAACAGAAATTATGAAACGAGCTGGCGTTGATATGACTAGGGCTGATTACTTGAGGGATGCTTTTGATACTTTGGAAAA
ACGTCTTAATGAATTTGAAAAAATCGTTAATGAATTAAACGCTGAAAAGTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.777

98.01

0.507

Multiple sequence alignment