Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EL133_RS00740 Genome accession   NZ_LR134323
Coordinates   146226..147587 (+) Length   453 a.a.
NCBI ID   WP_006738838.1    Uniprot ID   -
Organism   Streptococcus urinalis strain NCTC13766     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 141226..152587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL133_RS00715 (NCTC13766_00139) - 141616..142884 (-) 1269 WP_006739556.1 NAD(P)H-dependent oxidoreductase -
  EL133_RS00720 (NCTC13766_00140) - 142902..143504 (-) 603 WP_006739024.1 NADPH-dependent FMN reductase -
  EL133_RS00725 (NCTC13766_00141) - 143715..144842 (+) 1128 WP_006738610.1 SLC13 family permease -
  EL133_RS00730 (NCTC13766_00142) - 144918..145682 (+) 765 WP_006740348.1 epoxyqueuosine reductase QueH -
  EL133_RS00735 (NCTC13766_00143) - 145759..146202 (+) 444 WP_006739741.1 dUTP diphosphatase -
  EL133_RS00740 (NCTC13766_00144) radA 146226..147587 (+) 1362 WP_006738838.1 DNA repair protein RadA Machinery gene
  EL133_RS00745 (NCTC13766_00145) - 147712..148209 (+) 498 WP_006740083.1 carbonic anhydrase -
  EL133_RS00750 (NCTC13766_00146) - 148273..148584 (+) 312 WP_006739514.1 bacteriocin immunity protein -
  EL133_RS00755 (NCTC13766_00147) gltX 148865..150322 (+) 1458 WP_006740043.1 glutamate--tRNA ligase -
  EL133_RS00760 (NCTC13766_00148) rnpA 150437..150784 (+) 348 WP_006739743.1 ribonuclease P protein component -
  EL133_RS00765 (NCTC13766_00149) - 150781..151593 (+) 813 WP_006739154.1 YidC/Oxa1 family membrane protein insertase -
  EL133_RS00770 (NCTC13766_00150) jag 151605..152525 (+) 921 WP_006739041.1 RNA-binding cell elongation regulator Jag/EloR -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49555.01 Da        Isoelectric Point: 6.8563

>NTDB_id=1121505 EL133_RS00740 WP_006738838.1 146226..147587(+) (radA) [Streptococcus urinalis strain NCTC13766]
MAKKKTTFVCQKCGYQSPKYLGRCPNCSAWSSFVEEVEVTEVKNARVSLTGEKTKPIKLKEVDSINYARTKTKMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLADNGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQNIRAEVE
KINPDFLVIDSIQTIMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLADATGSAIVVTMEGSRPILAEVQALVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLNEPAIDLAVAVAIASSYREKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLSGITLPETITVVGVMTVNDVLKAVFK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1121505 EL133_RS00740 WP_006738838.1 146226..147587(+) (radA) [Streptococcus urinalis strain NCTC13766]
ATGGCTAAGAAAAAAACAACTTTTGTCTGTCAAAAATGTGGCTATCAATCTCCTAAATATCTAGGACGTTGTCCCAACTG
TTCGGCATGGTCATCATTTGTTGAAGAGGTTGAAGTAACAGAAGTAAAAAATGCGCGTGTTAGCTTAACGGGTGAAAAAA
CAAAACCAATCAAATTAAAAGAAGTTGATTCGATCAATTACGCGAGAACCAAGACAAAAATGGATGAGTTTAACCGTGTT
TTAGGCGGTGGTGTCGTTCCTGGCTCCTTAGTCTTAATTGGTGGTGATCCAGGAATAGGGAAGTCAACGTTACTTTTACA
AGTTTCAACACAATTGGCTGACAATGGGACAGTATTATATGTTTCAGGTGAAGAGTCTGCAGAACAAATCAAACTTCGAA
GTGAGCGACTTGGCGATATTGATAATGAATTCTATCTTTATGCAGAGACAAACATGCAAAATATAAGAGCCGAGGTTGAA
AAAATCAATCCTGATTTTTTAGTTATTGATTCTATTCAGACTATTATGAGTCCTGAAATTTCAAGTGTTCAAGGATCTGT
ATCTCAAGTTAGAGAAGTAACTGCAGAATTAATGCAATTAGCAAAGACAAATAATATCGCAACTTTTATTGTTGGACATG
TTACAAAAGAAGGGACATTGGCTGGACCCCGCATGCTTGAGCATATGGTGGATACAGTTTTGTATTTTGAAGGAGAAAGA
CACCATACGTTTAGGATTCTAAGAGCAGTTAAAAATCGTTTTGGTTCAACCAATGAAATTGGCATATTTGAGATGCAGTC
TGGTGGTTTAGTAGAAGTATTGAACCCTAGTCAAGTCTTTTTAGAAGAACGGTTGGCTGATGCCACTGGTTCTGCAATTG
TGGTAACGATGGAAGGTAGCCGCCCTATTCTAGCCGAAGTCCAAGCTTTGGTGACACCGACCGTTTTTGGAAATGCAAGA
CGAACAACAACAGGTTTAGATTTTAACCGTGTTAGTTTGATTATGGCTGTCTTGGAAAAAAGATGTGGCTTACTCTTACA
AAACCAAGATGCCTACTTAAAGTCTGCAGGTGGTGTGAAGCTTAATGAACCAGCAATTGATTTAGCAGTAGCAGTTGCAA
TTGCTTCAAGTTATAGGGAAAAACCAACAAACCCTCAAGAGGCTTTTATTGGTGAAATAGGTTTAACTGGTGAAATTAGA
CGGGTTACAAGGATTGAGCAAAGAATTAATGAAGCTGCTAAGTTAGGGTTTACCAAGATTTATGCACCAAAAAATTCACT
TTCTGGCATAACACTTCCTGAGACAATCACAGTAGTTGGTGTAATGACAGTAAATGATGTCTTAAAAGCAGTCTTTAAAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(359-425)

AAA domain (AAA_25)

(68-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.496

99.779

0.883
  radA Streptococcus pneumoniae D39

88.496

99.779

0.883
  radA Streptococcus pneumoniae R6

88.496

99.779

0.883
  radA Streptococcus pneumoniae TIGR4

88.496

99.779

0.883
  radA Streptococcus mitis SK321

88.274

99.779

0.881
  radA Streptococcus mitis NCTC 12261

88.053

99.779

0.879
  radA Bacillus subtilis subsp. subtilis str. 168

62.252

100

0.623

Multiple sequence alignment